Analysis of interatomic Contacts of Structural Units in PDB entry:
8UEM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UEM entry

There are 6 chains in PDB entry 8UEM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 17	ILE 799
B	MET 1	THR 289
C	MET 1	ARG 153
D	ASN 17	ILE 799
E	MET 1	THR 289
F	MET 1	ARG 153

There are 96 helices in PDB entry 8UEM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	37	Right-handed alpha
Helix 2	AA2	A	42	46	Right-handed 310
Helix 3	AA3	A	71	77	Right-handed alpha
Helix 4	AA4	A	86	92	Right-handed alpha
Helix 5	AA5	A	127	138	Right-handed alpha
Helix 6	AA6	A	150	154	Right-handed 310
Helix 7	AA7	A	181	192	Right-handed alpha
Helix 8	AA8	A	234	247	Right-handed alpha
Helix 9	AA9	A	249	253	Right-handed 310
Helix 10	AB1	A	271	285	Right-handed alpha
Helix 11	AB2	A	293	301	Right-handed alpha
Helix 12	AB3	A	348	354	Right-handed 310
Helix 13	AB4	A	384	404	Right-handed alpha
Helix 14	AB5	A	406	415	Right-handed alpha
Helix 15	AB6	A	417	421	Right-handed 310
Helix 16	AB7	A	435	448	Right-handed alpha
Helix 17	AB8	A	448	463	Right-handed alpha
Helix 18	AB9	A	518	532	Right-handed alpha
Helix 19	AC1	A	534	536	Right-handed 310
Helix 20	AC2	A	562	586	Right-handed alpha
Helix 21	AC3	A	589	591	Right-handed 310
Helix 22	AC4	A	612	621	Right-handed alpha
Helix 23	AC5	A	680	701	Right-handed alpha
Helix 24	AC6	A	724	728	Right-handed 310
Helix 25	AC7	A	752	770	Right-handed alpha
Helix 26	AC8	A	771	774	Right-handed 310
Helix 27	AC9	A	783	792	Right-handed alpha
Helix 28	AD1	B	14	26	Right-handed alpha
Helix 29	AD2	B	37	44	Right-handed alpha
Helix 30	AD3	B	56	59	Right-handed 310
Helix 31	AD4	B	79	86	Right-handed alpha
Helix 32	AD5	B	86	93	Right-handed alpha
Helix 33	AD6	B	93	102	Right-handed alpha
Helix 34	AD7	B	105	112	Right-handed alpha
Helix 35	AD8	B	113	121	Right-handed alpha
Helix 36	AD9	B	125	134	Right-handed alpha
Helix 37	AE1	B	151	154	Right-handed alpha
Helix 38	AE2	B	223	235	Right-handed alpha
Helix 39	AE3	B	240	254	Right-handed alpha
Helix 40	AE4	B	264	288	Right-handed alpha
Helix 41	AE5	C	21	28	Right-handed alpha
Helix 42	AE6	C	57	61	Right-handed 310
Helix 43	AE7	C	62	67	Right-handed alpha
Helix 44	AE8	C	73	78	Right-handed 310
Helix 45	AE9	C	84	93	Right-handed alpha
Helix 46	AF1	C	101	116	Right-handed alpha
Helix 47	AF2	C	120	128	Right-handed alpha
Helix 48	AF3	C	138	153	Right-handed alpha
Helix 49	AF4	D	31	37	Right-handed alpha
Helix 50	AF5	D	42	46	Right-handed 310
Helix 51	AF6	D	71	77	Right-handed alpha
Helix 52	AF7	D	86	92	Right-handed alpha
Helix 53	AF8	D	127	138	Right-handed alpha
Helix 54	AF9	D	150	154	Right-handed 310
Helix 55	AG1	D	181	192	Right-handed alpha
Helix 56	AG2	D	234	247	Right-handed alpha
Helix 57	AG3	D	249	251	Right-handed 310
Helix 58	AG4	D	271	285	Right-handed alpha
Helix 59	AG5	D	293	301	Right-handed alpha
Helix 60	AG6	D	348	354	Right-handed 310
Helix 61	AG7	D	384	404	Right-handed alpha
Helix 62	AG8	D	406	415	Right-handed alpha
Helix 63	AG9	D	417	421	Right-handed 310
Helix 64	AH1	D	435	448	Right-handed alpha
Helix 65	AH2	D	448	463	Right-handed alpha
Helix 66	AH3	D	518	532	Right-handed alpha
Helix 67	AH4	D	534	536	Right-handed 310
Helix 68	AH5	D	562	586	Right-handed alpha
Helix 69	AH6	D	589	591	Right-handed 310
Helix 70	AH7	D	612	620	Right-handed alpha
Helix 71	AH8	D	680	701	Right-handed alpha
Helix 72	AH9	D	724	728	Right-handed 310
Helix 73	AI1	D	752	770	Right-handed alpha
Helix 74	AI2	D	771	774	Right-handed 310
Helix 75	AI3	D	783	792	Right-handed alpha
Helix 76	AI4	E	14	26	Right-handed alpha
Helix 77	AI5	E	37	44	Right-handed alpha
Helix 78	AI6	E	56	59	Right-handed 310
Helix 79	AI7	E	79	86	Right-handed alpha
Helix 80	AI8	E	86	93	Right-handed alpha
Helix 81	AI9	E	93	102	Right-handed alpha
Helix 82	AJ1	E	105	112	Right-handed alpha
Helix 83	AJ2	E	113	121	Right-handed alpha
Helix 84	AJ3	E	125	134	Right-handed alpha
Helix 85	AJ4	E	151	154	Right-handed alpha
Helix 86	AJ5	E	223	235	Right-handed alpha
Helix 87	AJ6	E	240	254	Right-handed alpha
Helix 88	AJ7	E	264	288	Right-handed alpha
Helix 89	AJ8	F	21	28	Right-handed alpha
Helix 90	AJ9	F	59	61	Right-handed 310
Helix 91	AK1	F	62	67	Right-handed alpha
Helix 92	AK2	F	73	77	Right-handed 310
Helix 93	AK3	F	84	93	Right-handed alpha
Helix 94	AK4	F	101	116	Right-handed alpha
Helix 95	AK5	F	120	128	Right-handed alpha
Helix 96	AK6	F	138	153	Right-handed alpha

There are 31 sheets in PDB entry 8UEM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	85	first strand
Strand 2	A	119	125	anti-parallel
Strand 3	A	52	58	anti-parallel
Strand 4	A	288	291	parallel
Strand 5	A	214	219	anti-parallel
Strand 6	A	226	230	anti-parallel
Strand 7	A	255	256	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	113	first strand
Strand 2	A	64	70	anti-parallel
Strand 3	A	139	144	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	104	106	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	180	first strand
Strand 2	A	360	368	anti-parallel
Strand 3	A	321	331	parallel
Strand 4	A	307	315	anti-parallel
Strand 5	A	194	202	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	375	376	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	424	first strand
Strand 2	A	430	431	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	474	first strand
Strand 2	A	648	657	anti-parallel
Strand 3	A	664	674	anti-parallel
Strand 4	A	732	735	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	490	491	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	541	first strand
Strand 2	A	506	510	parallel
Strand 3	A	494	500	anti-parallel
Strand 4	A	633	639	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	595	first strand
Strand 2	A	599	602	anti-parallel
Strand 3	A	609	611	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	11	first strand
Strand 2	B	51	54	parallel
Strand 3	B	29	32	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	68	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	168	175	anti-parallel
Strand 4	B	137	142	anti-parallel
Strand 5	B	145	150	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	160	161	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	187	first strand
Strand 2	B	197	206	anti-parallel
Strand 3	B	209	218	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	15	first strand
Strand 2	C	2	7	anti-parallel
Strand 3	C	70	72	parallel
Strand 4	C	50	51	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	85	first strand
Strand 2	D	119	125	anti-parallel
Strand 3	D	52	58	anti-parallel
Strand 4	D	288	291	parallel
Strand 5	D	214	219	anti-parallel
Strand 6	D	226	230	anti-parallel
Strand 7	D	253	256	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	113	first strand
Strand 2	D	64	70	anti-parallel
Strand 3	D	139	144	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	104	106	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	180	first strand
Strand 2	D	360	368	anti-parallel
Strand 3	D	321	331	parallel
Strand 4	D	307	315	anti-parallel
Strand 5	D	194	202	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	304	first strand
Strand 2	D	375	376	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	423	424	first strand
Strand 2	D	430	431	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	465	474	first strand
Strand 2	D	648	657	anti-parallel
Strand 3	D	664	674	anti-parallel
Strand 4	D	732	735	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	486	487	first strand
Strand 2	D	490	491	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	541	first strand
Strand 2	D	506	510	parallel
Strand 3	D	494	500	anti-parallel
Strand 4	D	633	639	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	593	595	first strand
Strand 2	D	599	602	anti-parallel
Strand 3	D	605	611	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	11	first strand
Strand 2	E	51	54	parallel
Strand 3	E	29	32	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	68	first strand
Strand 2	E	71	75	anti-parallel
Strand 3	E	168	175	anti-parallel
Strand 4	E	137	142	anti-parallel
Strand 5	E	145	150	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	157	first strand
Strand 2	E	160	161	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	180	187	first strand
Strand 2	E	197	206	anti-parallel
Strand 3	E	209	218	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	15	first strand
Strand 2	F	2	7	anti-parallel
Strand 3	F	70	71	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	49	first strand
Strand 2	F	56	57	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UEM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UEM