Analysis of interatomic Contacts of Structural Units in PDB entry:
8UF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UF4 entry

There are 4 chains in PDB entry 8UF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 491ARG 652
B
 SER 654VAL 721
C
 PRO 493GLY 653
D
 SER 654PRO 720
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8UF4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
532 534Right-handed 310
Helix 2
AA2
A
566 570Right-handed 310
Helix 3
AA3
A
616 621Right-handed alpha
Helix 4
AA4
A
622 637Right-handed alpha
Helix 5
AA5
B
670 682Right-handed alpha
Helix 6
AA6
B
689 697Right-handed alpha
Helix 7
AA7
B
711 714Right-handed 310
Helix 8
AA8
C
566 570Right-handed 310
Helix 9
AA9
C
616 621Right-handed alpha
Helix 10
AB1
C
622 637Right-handed alpha
Helix 11
AB2
D
670 682Right-handed alpha
Helix 12
AB3
D
689 697Right-handed alpha
Helix 13
AB4
D
711 714Right-handed 310
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There are 7 sheets in PDB entry 8UF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
498 499first strand
Strand 2
A
523 525anti-parallel
Strand 3
A
529 530anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 509first strand
Strand 2
A
586 596parallel
Strand 3
A
571 580anti-parallel
Strand 4
A
535 539anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 517first strand
Strand 2
A
560 563anti-parallel
Strand 3
A
552 555anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
645 651first strand
Strand 2
B
655 661anti-parallel
Strand 3
A
606 612anti-parallel
Strand 4
B
702 709anti-parallel
Strand 5
B
717 719anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
505 509first strand
Strand 2
C
586 596parallel
Strand 3
C
571 580anti-parallel
Strand 4
C
535 539anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
514 517first strand
Strand 2
C
560 563anti-parallel
Strand 3
C
552 555anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
645 652first strand
Strand 2
D
655 661anti-parallel
Strand 3
C
606 612anti-parallel
Strand 4
D
702 709anti-parallel
Strand 5
D
717 719anti-parallel
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