Analysis of interatomic Contacts of Structural Units in PDB entry:
8UF5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UF5 entry

There are 2 chains in PDB entry 8UF5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 208	ILE 1047
B	VAL 212	SER 1048

There are 73 helices in PDB entry 8UF5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	219	224	Right-handed alpha
Helix 2	AA2	A	229	233	Right-handed 310
Helix 3	AA3	A	254	256	Right-handed 310
Helix 4	AA4	A	270	272	Right-handed 310
Helix 5	AA5	A	276	292	Right-handed alpha
Helix 6	AA6	A	302	325	Right-handed alpha
Helix 7	AA7	A	327	339	Right-handed alpha
Helix 8	AA8	A	340	350	Right-handed 310
Helix 9	AA9	A	370	374	Right-handed 310
Helix 10	AB1	A	416	432	Right-handed alpha
Helix 11	AB2	A	432	438	Right-handed alpha
Helix 12	AB3	A	440	444	Right-handed 310
Helix 13	AB4	A	452	457	Right-handed 310
Helix 14	AB5	A	458	473	Right-handed alpha
Helix 15	AB6	A	477	483	Right-handed alpha
Helix 16	AB7	A	494	502	Right-handed alpha
Helix 17	AB8	A	510	521	Right-handed alpha
Helix 18	AB9	A	524	528	Right-handed 310
Helix 19	AC1	A	532	537	Right-handed alpha
Helix 20	AC2	A	565	577	Right-handed alpha
Helix 21	AC3	A	587	603	Right-handed alpha
Helix 22	AC4	A	613	622	Right-handed alpha
Helix 23	AC5	A	633	637	Right-handed alpha
Helix 24	AC6	A	650	665	Right-handed alpha
Helix 25	AC7	A	699	704	Right-handed alpha
Helix 26	AC8	A	730	734	Right-handed 310
Helix 27	AC9	A	755	762	Right-handed 310
Helix 28	AD1	A	822	827	Right-handed alpha
Helix 29	AD2	A	843	846	Right-handed 310
Helix 30	AD3	A	847	855	Right-handed alpha
Helix 31	AD4	A	855	862	Right-handed alpha
Helix 32	AD5	A	881	887	Right-handed alpha
Helix 33	AD6	A	908	922	Right-handed alpha
Helix 34	AD7	A	976	982	Right-handed alpha
Helix 35	AD8	A	985	993	Right-handed alpha
Helix 36	AD9	A	993	999	Right-handed alpha
Helix 37	AE1	A	1018	1020	Right-handed 310
Helix 38	AE2	B	219	224	Right-handed alpha
Helix 39	AE3	B	229	233	Right-handed 310
Helix 40	AE4	B	270	272	Right-handed 310
Helix 41	AE5	B	276	292	Right-handed alpha
Helix 42	AE6	B	302	324	Right-handed alpha
Helix 43	AE7	B	327	339	Right-handed alpha
Helix 44	AE8	B	340	350	Right-handed 310
Helix 45	AE9	B	370	374	Right-handed 310
Helix 46	AF1	B	416	432	Right-handed alpha
Helix 47	AF2	B	432	439	Right-handed alpha
Helix 48	AF3	B	440	444	Right-handed 310
Helix 49	AF4	B	452	457	Right-handed 310
Helix 50	AF5	B	458	473	Right-handed alpha
Helix 51	AF6	B	477	483	Right-handed alpha
Helix 52	AF7	B	494	503	Right-handed alpha
Helix 53	AF8	B	510	521	Right-handed alpha
Helix 54	AF9	B	524	528	Right-handed 310
Helix 55	AG1	B	532	537	Right-handed alpha
Helix 56	AG2	B	565	577	Right-handed alpha
Helix 57	AG3	B	587	603	Right-handed alpha
Helix 58	AG4	B	613	622	Right-handed alpha
Helix 59	AG5	B	633	637	Right-handed alpha
Helix 60	AG6	B	650	665	Right-handed alpha
Helix 61	AG7	B	699	704	Right-handed alpha
Helix 62	AG8	B	730	734	Right-handed 310
Helix 63	AG9	B	755	762	Right-handed 310
Helix 64	AH1	B	822	827	Right-handed alpha
Helix 65	AH2	B	843	846	Right-handed 310
Helix 66	AH3	B	847	855	Right-handed alpha
Helix 67	AH4	B	855	862	Right-handed alpha
Helix 68	AH5	B	881	887	Right-handed alpha
Helix 69	AH6	B	908	922	Right-handed alpha
Helix 70	AH7	B	976	982	Right-handed alpha
Helix 71	AH8	B	985	993	Right-handed alpha
Helix 72	AH9	B	993	999	Right-handed alpha
Helix 73	AI1	B	1018	1020	Right-handed 310

There are 15 sheets in PDB entry 8UF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	267	268	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	253	first strand
Strand 2	A	257	260	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	934	935	first strand
Strand 2	A	410	412	anti-parallel
Strand 3	A	1022	1026	anti-parallel
Strand 4	A	360	363	anti-parallel
Strand 5	A	940	949	anti-parallel
Strand 6	A	962	971	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	488	first strand
Strand 2	A	447	450	parallel
Strand 3	A	925	930	parallel
Strand 4	A	866	868	parallel
Strand 5	A	830	832	parallel
Strand 6	A	628	632	parallel
Strand 7	A	554	556	parallel
Strand 8	A	508	509	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	545	first strand
Strand 2	A	669	676	anti-parallel
Strand 3	A	679	686	anti-parallel
Strand 4	A	707	712	anti-parallel
Strand 5	A	787	795	anti-parallel
Strand 6	A	737	744	anti-parallel
Strand 7	A	763	764	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	749	751	first strand
Strand 2	A	737	744	anti-parallel
Strand 3	A	787	795	anti-parallel
Strand 4	A	781	782	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	725	728	first strand
Strand 2	A	770	773	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1037	1038	first strand
Strand 2	A	1043	1044	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	267	268	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	934	935	first strand
Strand 2	B	410	412	anti-parallel
Strand 3	B	1022	1026	anti-parallel
Strand 4	B	360	363	anti-parallel
Strand 5	B	940	949	anti-parallel
Strand 6	B	964	971	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	488	first strand
Strand 2	B	447	450	parallel
Strand 3	B	925	930	parallel
Strand 4	B	866	868	parallel
Strand 5	B	830	832	parallel
Strand 6	B	628	632	parallel
Strand 7	B	554	556	parallel
Strand 8	B	508	509	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	669	676	anti-parallel
Strand 3	B	679	686	anti-parallel
Strand 4	B	707	712	anti-parallel
Strand 5	B	787	795	anti-parallel
Strand 6	B	737	744	anti-parallel
Strand 7	B	763	764	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	749	751	first strand
Strand 2	B	737	744	anti-parallel
Strand 3	B	787	795	anti-parallel
Strand 4	B	781	782	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	728	first strand
Strand 2	B	770	773	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1037	1038	first strand
Strand 2	B	1043	1044	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UF5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UF5