Analysis of interatomic Contacts of Structural Units in PDB entry:
8UF8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UF8 entry

There are 2 chains in PDB entry 8UF8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 34	PRO 956
B	GLU 34	PRO 956

There are 68 helices in PDB entry 8UF8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	45	Right-handed alpha
Helix 2	AA2	A	50	56	Right-handed alpha
Helix 3	AA3	A	81	85	Right-handed 310
Helix 4	AA4	A	88	95	Right-handed alpha
Helix 5	AA5	A	132	143	Right-handed alpha
Helix 6	AA6	A	152	157	Right-handed alpha
Helix 7	AA7	A	166	184	Right-handed alpha
Helix 8	AA8	A	197	201	Right-handed 310
Helix 9	AA9	A	205	209	Right-handed 310
Helix 10	AB1	A	210	228	Right-handed alpha
Helix 11	AB2	A	239	249	Right-handed alpha
Helix 12	AB3	A	260	286	Right-handed alpha
Helix 13	AB4	A	287	290	Right-handed 310
Helix 14	AB5	A	309	324	Right-handed alpha
Helix 15	AB6	A	324	333	Right-handed alpha
Helix 16	AB7	A	338	345	Right-handed alpha
Helix 17	AB8	A	353	361	Right-handed alpha
Helix 18	AB9	A	394	404	Right-handed alpha
Helix 19	AC1	A	427	448	Right-handed alpha
Helix 20	AC2	A	491	502	Right-handed alpha
Helix 21	AC3	A	577	588	Right-handed alpha
Helix 22	AC4	A	598	603	Right-handed alpha
Helix 23	AC5	A	612	629	Right-handed alpha
Helix 24	AC6	A	648	654	Right-handed alpha
Helix 25	AC7	A	660	677	Right-handed alpha
Helix 26	AC8	A	696	718	Right-handed alpha
Helix 27	AC9	A	742	757	Right-handed alpha
Helix 28	AD1	A	758	760	Right-handed 310
Helix 29	AD2	A	761	766	Right-handed alpha
Helix 30	AD3	A	771	781	Right-handed alpha
Helix 31	AD4	A	790	798	Right-handed alpha
Helix 32	AD5	A	850	864	Right-handed alpha
Helix 33	AD6	A	884	905	Right-handed alpha
Helix 34	AD7	A	938	951	Right-handed alpha
Helix 35	AD8	B	38	45	Right-handed alpha
Helix 36	AD9	B	50	56	Right-handed alpha
Helix 37	AE1	B	81	85	Right-handed 310
Helix 38	AE2	B	88	95	Right-handed alpha
Helix 39	AE3	B	132	143	Right-handed alpha
Helix 40	AE4	B	152	157	Right-handed alpha
Helix 41	AE5	B	166	184	Right-handed alpha
Helix 42	AE6	B	197	201	Right-handed 310
Helix 43	AE7	B	205	209	Right-handed 310
Helix 44	AE8	B	210	228	Right-handed alpha
Helix 45	AE9	B	239	249	Right-handed alpha
Helix 46	AF1	B	260	286	Right-handed alpha
Helix 47	AF2	B	287	290	Right-handed 310
Helix 48	AF3	B	309	324	Right-handed alpha
Helix 49	AF4	B	324	333	Right-handed alpha
Helix 50	AF5	B	338	345	Right-handed alpha
Helix 51	AF6	B	353	361	Right-handed alpha
Helix 52	AF7	B	394	404	Right-handed alpha
Helix 53	AF8	B	427	448	Right-handed alpha
Helix 54	AF9	B	491	502	Right-handed alpha
Helix 55	AG1	B	577	588	Right-handed alpha
Helix 56	AG2	B	598	603	Right-handed alpha
Helix 57	AG3	B	612	629	Right-handed alpha
Helix 58	AG4	B	648	654	Right-handed alpha
Helix 59	AG5	B	660	677	Right-handed alpha
Helix 60	AG6	B	696	718	Right-handed alpha
Helix 61	AG7	B	742	757	Right-handed alpha
Helix 62	AG8	B	758	760	Right-handed 310
Helix 63	AG9	B	761	766	Right-handed alpha
Helix 64	AH1	B	771	781	Right-handed alpha
Helix 65	AH2	B	790	798	Right-handed alpha
Helix 66	AH3	B	850	864	Right-handed alpha
Helix 67	AH4	B	884	905	Right-handed alpha
Helix 68	AH5	B	938	951	Right-handed alpha

There are 14 sheets in PDB entry 8UF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	452	457	parallel
Strand 3	A	410	414	parallel
Strand 4	A	367	370	parallel
Strand 5	A	295	299	parallel
Strand 6	A	233	238	parallel
Strand 7	A	186	190	parallel
Strand 8	A	146	148	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	389	390	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	420	first strand
Strand 2	A	472	473	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	479	first strand
Strand 2	A	488	490	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	529	first strand
Strand 2	A	594	595	parallel
Strand 3	A	634	638	parallel
Strand 4	A	683	688	parallel
Strand 5	A	725	731	parallel
Strand 6	A	804	807	parallel
Strand 7	A	868	873	parallel
Strand 8	A	909	914	parallel
Strand 9	A	524	529	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	734	737	first strand
Strand 2	A	811	815	parallel
Strand 3	A	830	833	anti-parallel
Strand 4	A	824	825	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	928	930	first strand
Strand 2	A	935	937	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	69	first strand
Strand 2	B	452	457	parallel
Strand 3	B	410	414	parallel
Strand 4	B	367	370	parallel
Strand 5	B	295	299	parallel
Strand 6	B	233	238	parallel
Strand 7	B	186	190	parallel
Strand 8	B	146	148	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	389	390	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	420	first strand
Strand 2	B	472	473	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	479	first strand
Strand 2	B	488	490	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	528	529	first strand
Strand 2	B	594	595	parallel
Strand 3	B	634	638	parallel
Strand 4	B	683	688	parallel
Strand 5	B	725	731	parallel
Strand 6	B	804	807	parallel
Strand 7	B	868	872	parallel
Strand 8	B	909	911	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	734	737	first strand
Strand 2	B	811	815	parallel
Strand 3	B	830	833	anti-parallel
Strand 4	B	824	825	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	928	930	first strand
Strand 2	B	935	937	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UF8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UF8