Analysis of interatomic Contacts of Structural Units in PDB entry:
8UFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UFD entry

There are 2 chains in PDB entry 8UFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 45GLN 519
B
 TRP 45GLN 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 8UFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 84Right-handed alpha
Helix 2
AA2
A
86 104Right-handed alpha
Helix 3
AA3
A
104 116Right-handed alpha
Helix 4
AA4
A
116 137Right-handed alpha
Helix 5
AA5
A
140 169Right-handed alpha
Helix 6
AA6
A
173 201Right-handed alpha
Helix 7
AA7
A
208 211Right-handed 310
Helix 8
AA8
A
212 227Right-handed alpha
Helix 9
AA9
A
239 264Right-handed alpha
Helix 10
AB1
A
267 290Right-handed alpha
Helix 11
AB2
A
298 302Right-handed 310
Helix 12
AB3
A
303 334Right-handed alpha
Helix 13
AB4
A
338 365Right-handed alpha
Helix 14
AB5
A
368 390Right-handed alpha
Helix 15
AB6
A
401 424Right-handed alpha
Helix 16
AB7
A
431 465Right-handed alpha
Helix 17
AB8
A
476 506Right-handed alpha
Helix 18
AB9
A
512 517Right-handed alpha
Helix 19
AC1
B
48 84Right-handed alpha
Helix 20
AC2
B
86 104Right-handed alpha
Helix 21
AC3
B
104 116Right-handed alpha
Helix 22
AC4
B
116 137Right-handed alpha
Helix 23
AC5
B
140 169Right-handed alpha
Helix 24
AC6
B
173 201Right-handed alpha
Helix 25
AC7
B
208 211Right-handed 310
Helix 26
AC8
B
212 227Right-handed alpha
Helix 27
AC9
B
239 264Right-handed alpha
Helix 28
AD1
B
267 290Right-handed alpha
Helix 29
AD2
B
298 302Right-handed 310
Helix 30
AD3
B
303 334Right-handed alpha
Helix 31
AD4
B
338 365Right-handed alpha
Helix 32
AD5
B
368 390Right-handed alpha
Helix 33
AD6
B
401 424Right-handed alpha
Helix 34
AD7
B
431 465Right-handed alpha
Helix 35
AD8
B
476 506Right-handed alpha
Helix 36
AD9
B
512 517Right-handed alpha
Back to top of page
There are no sheets in PDB entry 8UFD
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il