Analysis of interatomic Contacts of Structural Units in PDB entry:
8UFH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UFH entry

There are 4 chains in PDB entry 8UFH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 10	THR 248
B	GLN 10	PHE 247
F	ILE 2	LYS 350
G	ARG 5	ALA 355

There are 48 helices in PDB entry 8UFH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	59	Right-handed alpha
Helix 2	AA2	A	79	87	Right-handed alpha
Helix 3	AA3	A	102	112	Right-handed alpha
Helix 4	AA4	A	118	133	Right-handed alpha
Helix 5	AA5	A	135	139	Right-handed 310
Helix 6	AA6	A	147	162	Right-handed alpha
Helix 7	AA7	A	177	194	Right-handed alpha
Helix 8	AA8	A	204	209	Right-handed alpha
Helix 9	AA9	A	228	235	Right-handed alpha
Helix 10	AB1	A	235	242	Right-handed alpha
Helix 11	AB2	B	49	59	Right-handed alpha
Helix 12	AB3	B	79	87	Right-handed alpha
Helix 13	AB4	B	102	112	Right-handed alpha
Helix 14	AB5	B	118	133	Right-handed alpha
Helix 15	AB6	B	135	139	Right-handed 310
Helix 16	AB7	B	147	162	Right-handed alpha
Helix 17	AB8	B	177	194	Right-handed alpha
Helix 18	AB9	B	204	209	Right-handed alpha
Helix 19	AC1	B	228	234	Right-handed alpha
Helix 20	AC2	B	235	242	Right-handed alpha
Helix 21	AC3	F	3	40	Right-handed alpha
Helix 22	AC4	F	47	55	Right-handed alpha
Helix 23	AC5	F	55	82	Right-handed alpha
Helix 24	AC6	F	83	90	Right-handed alpha
Helix 25	AC7	F	94	101	Right-handed alpha
Helix 26	AC8	F	102	119	Right-handed alpha
Helix 27	AC9	F	119	136	Right-handed alpha
Helix 28	AD1	F	139	144	Right-handed 310
Helix 29	AD2	F	247	251	Right-handed 310
Helix 30	AD3	F	252	257	Right-handed alpha
Helix 31	AD4	F	262	275	Right-handed alpha
Helix 32	AD5	F	277	285	Right-handed alpha
Helix 33	AD6	F	301	325	Right-handed alpha
Helix 34	AD7	F	331	349	Right-handed alpha
Helix 35	AD8	G	6	39	Right-handed alpha
Helix 36	AD9	G	40	42	Right-handed 310
Helix 37	AE1	G	47	58	Right-handed alpha
Helix 38	AE2	G	58	85	Right-handed alpha
Helix 39	AE3	G	86	94	Right-handed alpha
Helix 40	AE4	G	97	122	Right-handed alpha
Helix 41	AE5	G	123	135	Right-handed alpha
Helix 42	AE6	G	231	238	Right-handed 310
Helix 43	AE7	G	241	245	Right-handed 310
Helix 44	AE8	G	246	261	Right-handed alpha
Helix 45	AE9	G	264	276	Right-handed alpha
Helix 46	AF1	G	276	294	Right-handed alpha
Helix 47	AF2	G	300	327	Right-handed alpha
Helix 48	AF3	G	332	354	Right-handed alpha

There are 7 sheets in PDB entry 8UFH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	35	first strand
Strand 2	A	11	20	anti-parallel
Strand 3	A	65	70	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	91	first strand
Strand 2	A	166	170	parallel
Strand 3	A	197	201	parallel
Strand 4	A	39	43	parallel
Strand 5	A	214	219	parallel
Strand 6	A	222	225	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	35	first strand
Strand 2	B	11	21	anti-parallel
Strand 3	B	65	70	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	166	170	parallel
Strand 3	B	197	201	parallel
Strand 4	B	39	43	parallel
Strand 5	B	214	219	parallel
Strand 6	B	222	227	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	152	first strand
Strand 2	F	155	161	anti-parallel
Strand 3	F	169	175	anti-parallel
Strand 4	F	186	194	anti-parallel
Strand 5	F	206	215	anti-parallel
Strand 6	F	224	233	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	146	153	first strand
Strand 2	G	156	163	anti-parallel
Strand 3	G	168	175	anti-parallel
Strand 4	G	186	196	anti-parallel
Strand 5	G	199	203	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	146	153	first strand
Strand 2	G	156	163	anti-parallel
Strand 3	G	168	175	anti-parallel
Strand 4	G	186	196	anti-parallel
Strand 5	G	206	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UFH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UFH