Analysis of interatomic Contacts of Structural Units in PDB entry:
8UFI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UFI entry

There are 4 chains in PDB entry 8UFI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7GLY 822
B
 GLN 7LYS 827
C
 SER 12ILE 86
D
 ARG 11ILE 86
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 8UFI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 16Right-handed alpha
Helix 2
AA2
A
16 28Right-handed alpha
Helix 3
AA3
A
28 37Right-handed alpha
Helix 4
AA4
A
53 67Right-handed alpha
Helix 5
AA5
A
73 89Right-handed alpha
Helix 6
AA6
A
120 125Right-handed alpha
Helix 7
AA7
A
138 148Right-handed alpha
Helix 8
AA8
A
164 171Right-handed alpha
Helix 9
AA9
A
204 249Right-handed alpha
Helix 10
AB1
A
254 266Right-handed alpha
Helix 11
AB2
A
287 296Right-handed alpha
Helix 12
AB3
A
345 354Right-handed alpha
Helix 13
AB4
A
362 365Right-handed 310
Helix 14
AB5
A
413 430Right-handed alpha
Helix 15
AB6
A
431 459Right-handed alpha
Helix 16
AB7
A
464 468Right-handed 310
Helix 17
AB8
A
483 495Right-handed alpha
Helix 18
AB9
A
497 502Right-handed alpha
Helix 19
AC1
A
514 529Right-handed alpha
Helix 20
AC2
A
530 536Right-handed alpha
Helix 21
AC3
A
538 553Right-handed alpha
Helix 22
AC4
A
560 577Right-handed alpha
Helix 23
AC5
A
579 584Right-handed 310
Helix 24
AC6
A
585 598Right-handed alpha
Helix 25
AC7
A
607 614Right-handed alpha
Helix 26
AC8
A
616 622Right-handed alpha
Helix 27
AC9
A
625 641Right-handed alpha
Helix 28
AD1
A
651 668Right-handed alpha
Helix 29
AD2
A
670 677Right-handed alpha
Helix 30
AD3
A
678 691Right-handed alpha
Helix 31
AD4
A
693 704Right-handed alpha
Helix 32
AD5
A
705 721Right-handed alpha
Helix 33
AD6
A
721 726Right-handed alpha
Helix 34
AD7
A
727 752Right-handed alpha
Helix 35
AD8
A
765 767Right-handed 310
Helix 36
AD9
A
768 780Right-handed alpha
Helix 37
AE1
A
780 792Right-handed alpha
Helix 38
AE2
A
795 821Right-handed alpha
Helix 39
AE3
B
8 15Right-handed alpha
Helix 40
AE4
B
15 25Right-handed alpha
Helix 41
AE5
B
47 68Right-handed alpha
Helix 42
AE6
B
71 88Right-handed alpha
Helix 43
AE7
B
125 129Right-handed 310
Helix 44
AE8
B
137 146Right-handed alpha
Helix 45
AE9
B
162 168Right-handed alpha
Helix 46
AF1
B
202 213Right-handed alpha
Helix 47
AF2
B
213 247Right-handed alpha
Helix 48
AF3
B
252 264Right-handed alpha
Helix 49
AF4
B
264 269Right-handed alpha
Helix 50
AF5
B
285 294Right-handed alpha
Helix 51
AF6
B
337 342Right-handed alpha
Helix 52
AF7
B
343 352Right-handed alpha
Helix 53
AF8
B
360 363Right-handed 310
Helix 54
AF9
B
411 428Right-handed alpha
Helix 55
AG1
B
428 457Right-handed alpha
Helix 56
AG2
B
461 466Right-handed 310
Helix 57
AG3
B
481 493Right-handed alpha
Helix 58
AG4
B
512 527Right-handed alpha
Helix 59
AG5
B
528 533Right-handed alpha
Helix 60
AG6
B
536 551Right-handed alpha
Helix 61
AG7
B
559 575Right-handed alpha
Helix 62
AG8
B
583 596Right-handed alpha
Helix 63
AG9
B
605 612Right-handed alpha
Helix 64
AH1
B
614 620Right-handed alpha
Helix 65
AH2
B
623 639Right-handed alpha
Helix 66
AH3
B
640 643Right-handed 310
Helix 67
AH4
B
649 666Right-handed alpha
Helix 68
AH5
B
668 689Right-handed alpha
Helix 69
AH6
B
691 702Right-handed alpha
Helix 70
AH7
B
703 719Right-handed alpha
Helix 71
AH8
B
725 751Right-handed alpha
Helix 72
AH9
B
763 765Right-handed 310
Helix 73
AI1
B
766 778Right-handed alpha
Helix 74
AI2
B
778 790Right-handed alpha
Helix 75
AI3
B
793 824Right-handed alpha
Helix 76
AI4
C
56 60Right-handed 310
Helix 77
AI5
C
78 84Right-handed alpha
Helix 78
AI6
D
56 60Right-handed 310
Helix 79
AI7
D
78 84Right-handed alpha
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There are 4 sheets in PDB entry 8UFI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
106 115anti-parallel
Strand 3
A
94 101anti-parallel
Strand 4
A
187 194anti-parallel
Strand 5
A
177 184anti-parallel
Strand 6
A
151 153anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 333first strand
Strand 2
A
315 322anti-parallel
Strand 3
A
274 280anti-parallel
Strand 4
A
399 403anti-parallel
Strand 5
A
384 389anti-parallel
Strand 6
A
355 360anti-parallel
Strand 7
C
31 32anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
103 113anti-parallel
Strand 3
B
89 100anti-parallel
Strand 4
B
185 195anti-parallel
Strand 5
B
175 182anti-parallel
Strand 6
B
149 151anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 331first strand
Strand 2
B
313 320anti-parallel
Strand 3
B
270 278anti-parallel
Strand 4
B
395 404anti-parallel
Strand 5
B
382 389anti-parallel
Strand 6
B
355 358anti-parallel
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