Analysis of interatomic Contacts of Structural Units in PDB entry:
8UFL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UFL entry

There are 2 chains in PDB entry 8UFL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 389SER 651
B
 ILE 390SER 650
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8UFL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
400 405Right-handed alpha
Helix 2
AA2
A
422 427Right-handed alpha
Helix 3
AA3
A
434 440Right-handed alpha
Helix 4
AA4
A
461 465Right-handed 310
Helix 5
AA5
A
467 476Right-handed alpha
Helix 6
AA6
A
496 507Right-handed alpha
Helix 7
AA7
A
520 525Right-handed alpha
Helix 8
AA8
A
532 544Right-handed alpha
Helix 9
AA9
A
553 564Right-handed alpha
Helix 10
AB1
A
588 600Right-handed alpha
Helix 11
AB2
A
616 625Right-handed alpha
Helix 12
AB3
A
637 650Right-handed alpha
Helix 13
AB4
B
400 408Right-handed alpha
Helix 14
AB5
B
422 427Right-handed alpha
Helix 15
AB6
B
434 440Right-handed alpha
Helix 16
AB7
B
461 465Right-handed 310
Helix 17
AB8
B
467 476Right-handed alpha
Helix 18
AB9
B
496 507Right-handed alpha
Helix 19
AC1
B
520 525Right-handed alpha
Helix 20
AC2
B
532 544Right-handed alpha
Helix 21
AC3
B
553 564Right-handed alpha
Helix 22
AC4
B
588 600Right-handed alpha
Helix 23
AC5
B
616 625Right-handed alpha
Helix 24
AC6
B
637 650Right-handed alpha
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There are 8 sheets in PDB entry 8UFL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 396first strand
Strand 2
A
510 513parallel
Strand 3
A
482 485parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 415first strand
Strand 2
A
454 458parallel
Strand 3
A
448 451anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
528 529first strand
Strand 2
A
631 634parallel
Strand 3
A
603 605parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
546 550first strand
Strand 2
A
579 583parallel
Strand 3
A
572 575anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
393 396first strand
Strand 2
B
510 513parallel
Strand 3
B
482 485parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 415first strand
Strand 2
B
454 458parallel
Strand 3
B
448 451anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
528 529first strand
Strand 2
B
631 634parallel
Strand 3
B
603 605parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
547 550first strand
Strand 2
B
579 583parallel
Strand 3
B
572 575anti-parallel
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