Analysis of interatomic Contacts of Structural Units in PDB entry:
8UFN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UFN entry

There are 2 chains in PDB entry 8UFN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 408	VAL 682
B	PRO 408	VAL 682

There are 2 helices in PDB entry 8UFN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	658	664	Right-handed alpha
Helix 2	AA2	B	658	664	Right-handed alpha

There are 8 sheets in PDB entry 8UFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	476	first strand
Strand 2	A	464	467	anti-parallel
Strand 3	A	512	516	anti-parallel
Strand 4	A	521	536	anti-parallel
Strand 5	A	548	557	anti-parallel
Strand 6	A	619	627	anti-parallel
Strand 7	A	478	482	anti-parallel
Strand 8	A	419	427	anti-parallel
Strand 9	A	487	493	anti-parallel
Strand 10	A	496	501	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	476	first strand
Strand 2	A	464	467	anti-parallel
Strand 3	A	512	516	anti-parallel
Strand 4	A	521	536	anti-parallel
Strand 5	A	548	557	anti-parallel
Strand 6	A	619	627	anti-parallel
Strand 7	A	478	482	anti-parallel
Strand 8	A	419	427	anti-parallel
Strand 9	A	670	677	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	436	441	first strand
Strand 2	A	429	433	anti-parallel
Strand 3	A	606	610	anti-parallel
Strand 4	A	566	568	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	446	first strand
Strand 2	A	570	577	anti-parallel
Strand 3	A	589	598	anti-parallel
Strand 4	A	645	647	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	476	first strand
Strand 2	B	464	467	anti-parallel
Strand 3	B	512	517	anti-parallel
Strand 4	B	520	536	anti-parallel
Strand 5	B	548	557	anti-parallel
Strand 6	B	619	627	anti-parallel
Strand 7	B	478	482	anti-parallel
Strand 8	B	419	427	anti-parallel
Strand 9	B	487	493	anti-parallel
Strand 10	B	496	501	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	476	first strand
Strand 2	B	464	467	anti-parallel
Strand 3	B	512	517	anti-parallel
Strand 4	B	520	536	anti-parallel
Strand 5	B	548	557	anti-parallel
Strand 6	B	619	627	anti-parallel
Strand 7	B	478	482	anti-parallel
Strand 8	B	419	427	anti-parallel
Strand 9	B	670	677	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	432	first strand
Strand 2	B	606	609	anti-parallel
Strand 3	B	566	568	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	446	first strand
Strand 2	B	570	577	anti-parallel
Strand 3	B	589	598	anti-parallel
Strand 4	B	645	647	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UFN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UFN