Analysis of interatomic Contacts of Structural Units in PDB entry:
8UGB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UGB entry

There are 4 chains in PDB entry 8UGB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7GLU 817
B
 GLN 7LYS 817
C
 ARG 11GLN 34
D
 SER 12GLN 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 85 helices in PDB entry 8UGB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 16Right-handed alpha
Helix 2
AA2
A
16 28Right-handed alpha
Helix 3
AA3
A
28 38Right-handed alpha
Helix 4
AA4
A
53 66Right-handed alpha
Helix 5
AA5
A
73 90Right-handed alpha
Helix 6
AA6
A
120 125Right-handed alpha
Helix 7
AA7
A
127 131Right-handed 310
Helix 8
AA8
A
139 148Right-handed alpha
Helix 9
AA9
A
164 170Right-handed alpha
Helix 10
AB1
A
204 249Right-handed alpha
Helix 11
AB2
A
254 266Right-handed alpha
Helix 12
AB3
A
266 271Right-handed alpha
Helix 13
AB4
A
287 296Right-handed alpha
Helix 14
AB5
A
345 354Right-handed alpha
Helix 15
AB6
A
362 365Right-handed 310
Helix 16
AB7
A
413 430Right-handed alpha
Helix 17
AB8
A
431 459Right-handed alpha
Helix 18
AB9
A
461 466Right-handed alpha
Helix 19
AC1
A
470 475Right-handed alpha
Helix 20
AC2
A
483 495Right-handed alpha
Helix 21
AC3
A
497 502Right-handed alpha
Helix 22
AC4
A
514 529Right-handed alpha
Helix 23
AC5
A
530 535Right-handed alpha
Helix 24
AC6
A
538 553Right-handed alpha
Helix 25
AC7
A
560 577Right-handed alpha
Helix 26
AC8
A
579 584Right-handed 310
Helix 27
AC9
A
585 598Right-handed alpha
Helix 28
AD1
A
607 615Right-handed alpha
Helix 29
AD2
A
616 622Right-handed alpha
Helix 30
AD3
A
626 641Right-handed alpha
Helix 31
AD4
A
642 650Right-handed 310
Helix 32
AD5
A
651 669Right-handed alpha
Helix 33
AD6
A
670 688Right-handed alpha
Helix 34
AD7
A
689 691Right-handed 310
Helix 35
AD8
A
693 704Right-handed alpha
Helix 36
AD9
A
705 721Right-handed alpha
Helix 37
AE1
A
722 726Right-handed 310
Helix 38
AE2
A
727 735Right-handed alpha
Helix 39
AE3
A
738 754Right-handed alpha
Helix 40
AE4
A
765 767Right-handed 310
Helix 41
AE5
A
768 778Right-handed alpha
Helix 42
AE6
A
780 792Right-handed alpha
Helix 43
AE7
A
795 817Right-handed alpha
Helix 44
AE8
B
8 15Right-handed alpha
Helix 45
AE9
B
15 25Right-handed alpha
Helix 46
AF1
B
47 67Right-handed alpha
Helix 47
AF2
B
71 84Right-handed alpha
Helix 48
AF3
B
118 123Right-handed alpha
Helix 49
AF4
B
125 129Right-handed 310
Helix 50
AF5
B
136 146Right-handed alpha
Helix 51
AF6
B
162 169Right-handed alpha
Helix 52
AF7
B
202 247Right-handed alpha
Helix 53
AF8
B
252 264Right-handed alpha
Helix 54
AF9
B
264 269Right-handed alpha
Helix 55
AG1
B
285 294Right-handed alpha
Helix 56
AG2
B
337 342Right-handed alpha
Helix 57
AG3
B
343 352Right-handed alpha
Helix 58
AG4
B
360 363Right-handed 310
Helix 59
AG5
B
411 428Right-handed alpha
Helix 60
AG6
B
429 457Right-handed alpha
Helix 61
AG7
B
461 466Right-handed 310
Helix 62
AG8
B
468 473Right-handed alpha
Helix 63
AG9
B
476 480Right-handed 310
Helix 64
AH1
B
481 493Right-handed alpha
Helix 65
AH2
B
512 528Right-handed alpha
Helix 66
AH3
B
528 534Right-handed alpha
Helix 67
AH4
B
536 551Right-handed alpha
Helix 68
AH5
B
558 575Right-handed alpha
Helix 69
AH6
B
577 582Right-handed 310
Helix 70
AH7
B
583 596Right-handed alpha
Helix 71
AH8
B
605 613Right-handed alpha
Helix 72
AH9
B
614 620Right-handed alpha
Helix 73
AI1
B
626 639Right-handed alpha
Helix 74
AI2
B
640 643Right-handed 310
Helix 75
AI3
B
649 666Right-handed alpha
Helix 76
AI4
B
668 675Right-handed alpha
Helix 77
AI5
B
675 688Right-handed alpha
Helix 78
AI6
B
691 700Right-handed alpha
Helix 79
AI7
B
702 719Right-handed alpha
Helix 80
AI8
B
725 750Right-handed alpha
Helix 81
AI9
B
756 760Right-handed 310
Helix 82
AJ1
B
763 765Right-handed 310
Helix 83
AJ2
B
766 778Right-handed alpha
Helix 84
AJ3
B
778 790Right-handed alpha
Helix 85
AJ4
B
793 817Right-handed alpha
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There are 4 sheets in PDB entry 8UGB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
105 115anti-parallel
Strand 3
A
91 102anti-parallel
Strand 4
A
188 197anti-parallel
Strand 5
A
177 183anti-parallel
Strand 6
A
151 153anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 333first strand
Strand 2
A
315 322anti-parallel
Strand 3
A
274 280anti-parallel
Strand 4
A
397 403anti-parallel
Strand 5
A
384 391anti-parallel
Strand 6
A
357 360anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
103 110anti-parallel
Strand 3
B
91 100anti-parallel
Strand 4
B
185 193anti-parallel
Strand 5
B
175 182anti-parallel
Strand 6
B
149 151anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 330first strand
Strand 2
B
313 320anti-parallel
Strand 3
B
272 278anti-parallel
Strand 4
B
395 401anti-parallel
Strand 5
B
382 389anti-parallel
Strand 6
B
355 358anti-parallel
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