Analysis of interatomic Contacts of Structural Units in PDB entry:
8UGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UGM entry

There are 2 chains in PDB entry 8UGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLY 276
B
 GLY 0GLY 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8UGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 34Right-handed 310
Helix 2
AA2
A
35 43Right-handed alpha
Helix 3
AA3
A
66 71Right-handed 310
Helix 4
AA4
A
75 93Right-handed alpha
Helix 5
AA5
A
103 116Right-handed alpha
Helix 6
AA6
A
136 153Right-handed alpha
Helix 7
AA7
A
153 167Right-handed alpha
Helix 8
AA8
A
170 179Right-handed alpha
Helix 9
AA9
A
183 201Right-handed alpha
Helix 10
AB1
A
201 207Right-handed alpha
Helix 11
AB2
A
211 218Right-handed alpha
Helix 12
AB3
A
233 247Right-handed alpha
Helix 13
AB4
A
258 263Right-handed alpha
Helix 14
AB5
A
263 276Right-handed alpha
Helix 15
AB6
B
31 34Right-handed 310
Helix 16
AB7
B
35 43Right-handed alpha
Helix 17
AB8
B
66 71Right-handed 310
Helix 18
AB9
B
75 93Right-handed alpha
Helix 19
AC1
B
103 116Right-handed alpha
Helix 20
AC2
B
136 153Right-handed alpha
Helix 21
AC3
B
153 167Right-handed alpha
Helix 22
AC4
B
170 179Right-handed alpha
Helix 23
AC5
B
183 201Right-handed alpha
Helix 24
AC6
B
201 207Right-handed alpha
Helix 25
AC7
B
211 217Right-handed alpha
Helix 26
AC8
B
218 220Right-handed 310
Helix 27
AC9
B
233 247Right-handed alpha
Helix 28
AD1
B
258 263Right-handed alpha
Helix 29
AD2
B
263 276Right-handed alpha
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There are 4 sheets in PDB entry 8UGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
9 17anti-parallel
Strand 3
A
60 61anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
9 17anti-parallel
Strand 3
A
47 52anti-parallel
Strand 4
A
21 25parallel
Strand 5
A
97 102parallel
Strand 6
A
120 126parallel
Strand 7
B
222 227parallel
Strand 8
B
250 253parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
222 227parallel
Strand 3
B
120 126parallel
Strand 4
B
97 102parallel
Strand 5
B
21 25parallel
Strand 6
B
47 52parallel
Strand 7
B
9 17anti-parallel
Strand 8
B
2 6anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 253first strand
Strand 2
A
222 227parallel
Strand 3
B
120 126parallel
Strand 4
B
97 102parallel
Strand 5
B
21 25parallel
Strand 6
B
47 52parallel
Strand 7
B
9 17anti-parallel
Strand 8
B
60 61anti-parallel
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