Analysis of interatomic Contacts of Structural Units in PDB entry:
8UGO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UGO entry

There are 6 chains in PDB entry 8UGO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 67	ALA 365
E	VAL 50	SER 170
B	LEU 66	ALA 368
C	LEU 47	ILE 171
D	LYS 67	ALA 365
F	ARG 51	ILE 171

There are 56 helices in PDB entry 8UGO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	81	Right-handed 310
Helix 2	AA2	A	87	101	Right-handed alpha
Helix 3	AA3	A	105	109	Right-handed alpha
Helix 4	AA4	A	113	119	Right-handed alpha
Helix 5	AA5	A	158	171	Right-handed alpha
Helix 6	AA6	A	189	204	Right-handed alpha
Helix 7	AA7	A	215	218	Right-handed 310
Helix 8	AA8	A	219	228	Right-handed alpha
Helix 9	AA9	A	241	243	Right-handed 310
Helix 10	AB1	A	244	249	Right-handed alpha
Helix 11	AB2	A	254	269	Right-handed alpha
Helix 12	AB3	A	285	299	Right-handed alpha
Helix 13	AB4	A	324	339	Right-handed alpha
Helix 14	AB5	A	354	364	Right-handed alpha
Helix 15	AB6	E	72	80	Right-handed alpha
Helix 16	AB7	E	125	128	Right-handed 310
Helix 17	AB8	E	132	137	Right-handed alpha
Helix 18	AB9	E	151	158	Right-handed 310
Helix 19	AC1	E	160	170	Right-handed alpha
Helix 20	AC2	B	77	81	Right-handed 310
Helix 21	AC3	B	87	100	Right-handed alpha
Helix 22	AC4	B	105	109	Right-handed alpha
Helix 23	AC5	B	113	120	Right-handed alpha
Helix 24	AC6	B	158	171	Right-handed alpha
Helix 25	AC7	B	189	204	Right-handed alpha
Helix 26	AC8	B	215	218	Right-handed 310
Helix 27	AC9	B	219	228	Right-handed alpha
Helix 28	AD1	B	241	243	Right-handed 310
Helix 29	AD2	B	244	249	Right-handed alpha
Helix 30	AD3	B	254	269	Right-handed alpha
Helix 31	AD4	B	285	299	Right-handed alpha
Helix 32	AD5	B	324	339	Right-handed alpha
Helix 33	AD6	B	354	367	Right-handed alpha
Helix 34	AD7	C	72	80	Right-handed alpha
Helix 35	AD8	C	125	128	Right-handed 310
Helix 36	AD9	C	132	137	Right-handed alpha
Helix 37	AE1	C	151	158	Right-handed 310
Helix 38	AE2	C	161	169	Right-handed alpha
Helix 39	AE3	D	77	81	Right-handed 310
Helix 40	AE4	D	87	100	Right-handed alpha
Helix 41	AE5	D	104	109	Right-handed alpha
Helix 42	AE6	D	113	120	Right-handed alpha
Helix 43	AE7	D	158	171	Right-handed alpha
Helix 44	AE8	D	189	204	Right-handed alpha
Helix 45	AE9	D	215	218	Right-handed 310
Helix 46	AF1	D	219	228	Right-handed alpha
Helix 47	AF2	D	241	243	Right-handed 310
Helix 48	AF3	D	244	249	Right-handed alpha
Helix 49	AF4	D	254	269	Right-handed alpha
Helix 50	AF5	D	285	298	Right-handed alpha
Helix 51	AF6	D	324	339	Right-handed alpha
Helix 52	AF7	D	354	363	Right-handed alpha
Helix 53	AF8	F	72	80	Right-handed alpha
Helix 54	AF9	F	132	137	Right-handed alpha
Helix 55	AG1	F	151	158	Right-handed 310
Helix 56	AG2	F	160	169	Right-handed alpha

There are 12 sheets in PDB entry 8UGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	104	first strand
Strand 2	A	130	132	anti-parallel
Strand 3	A	174	179	parallel
Strand 4	A	208	212	parallel
Strand 5	A	233	235	parallel
Strand 6	A	273	280	parallel
Strand 7	A	303	308	parallel
Strand 8	A	342	345	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	A	147	148	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	58	63	anti-parallel
Strand 3	E	66	71	anti-parallel
Strand 4	E	145	147	anti-parallel
Strand 5	E	118	123	anti-parallel
Strand 6	E	93	94	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	86	first strand
Strand 2	E	99	105	anti-parallel
Strand 3	E	109	113	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	104	first strand
Strand 2	B	130	132	anti-parallel
Strand 3	B	174	179	parallel
Strand 4	B	208	212	parallel
Strand 5	B	233	235	parallel
Strand 6	B	273	280	parallel
Strand 7	B	303	308	parallel
Strand 8	B	343	345	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	137	first strand
Strand 2	B	147	148	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	118	123	anti-parallel
Strand 3	C	145	147	anti-parallel
Strand 4	C	66	71	anti-parallel
Strand 5	C	58	63	anti-parallel
Strand 6	C	52	53	anti-parallel
Strand 7	C	159	160	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	86	first strand
Strand 2	C	99	105	anti-parallel
Strand 3	C	109	113	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	132	first strand
Strand 2	D	174	179	parallel
Strand 3	D	208	212	parallel
Strand 4	D	233	235	parallel
Strand 5	D	273	280	parallel
Strand 6	D	303	308	parallel
Strand 7	D	342	345	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	137	first strand
Strand 2	D	147	148	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	53	first strand
Strand 2	F	58	61	anti-parallel
Strand 3	F	66	71	anti-parallel
Strand 4	F	145	148	anti-parallel
Strand 5	F	118	123	anti-parallel
Strand 6	F	93	94	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	86	first strand
Strand 2	F	99	105	anti-parallel
Strand 3	F	109	113	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UGO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UGO