Analysis of interatomic Contacts of Structural Units in PDB entry:
8UGQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UGQ entry

There are 22 chains in PDB entry 8UGQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 30	ASN 243
L	C 900	A 908
B	LYS 29	ASN 243
M	C 900	A 908
C	ALA 31	ASN 243
N	G 901	A 908
D	ARG 30	ASN 243
O	C 900	A 908
E	ARG 30	ASN 243
P	C 900	A 908
F	ARG 30	ASN 243
Q	C 900	A 908
G	ARG 30	ASN 243
R	C 900	A 908
H	LYS 34	ASN 243
S	C 900	A 908
I	ALA 31	ASN 243
T	C 900	A 908
J	LYS 29	ASN 243
U	C 900	A 908
K	ALA 31	ASN 243
V	C 900	A 908

There are 51 helices in PDB entry 8UGQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	97	101	Right-handed 310
Helix 2	AA2	A	123	128	Right-handed alpha
Helix 3	AA3	A	131	135	Right-handed 310
Helix 4	AA4	A	137	141	Right-handed 310
Helix 5	AA5	A	207	209	Right-handed 310
Helix 6	AA6	B	123	128	Right-handed alpha
Helix 7	AA7	B	131	135	Right-handed 310
Helix 8	AA8	B	137	141	Right-handed 310
Helix 9	AA9	B	207	209	Right-handed 310
Helix 10	AB1	C	95	100	Right-handed alpha
Helix 11	AB2	C	123	128	Right-handed alpha
Helix 12	AB3	C	131	135	Right-handed 310
Helix 13	AB4	C	137	141	Right-handed 310
Helix 14	AB5	C	145	149	Right-handed 310
Helix 15	AB6	C	207	209	Right-handed 310
Helix 16	AB7	D	97	101	Right-handed 310
Helix 17	AB8	D	123	128	Right-handed alpha
Helix 18	AB9	D	131	135	Right-handed 310
Helix 19	AC1	D	137	141	Right-handed 310
Helix 20	AC2	D	207	209	Right-handed 310
Helix 21	AC3	E	123	128	Right-handed alpha
Helix 22	AC4	E	131	135	Right-handed 310
Helix 23	AC5	E	137	141	Right-handed 310
Helix 24	AC6	E	207	209	Right-handed 310
Helix 25	AC7	F	97	101	Right-handed 310
Helix 26	AC8	F	123	128	Right-handed alpha
Helix 27	AC9	F	131	135	Right-handed 310
Helix 28	AD1	F	137	141	Right-handed 310
Helix 29	AD2	F	207	209	Right-handed 310
Helix 30	AD3	G	123	128	Right-handed alpha
Helix 31	AD4	G	131	135	Right-handed 310
Helix 32	AD5	G	137	141	Right-handed 310
Helix 33	AD6	G	207	209	Right-handed 310
Helix 34	AD7	H	123	128	Right-handed alpha
Helix 35	AD8	H	131	135	Right-handed 310
Helix 36	AD9	H	137	141	Right-handed 310
Helix 37	AE1	H	207	209	Right-handed 310
Helix 38	AE2	I	48	52	Right-handed 310
Helix 39	AE3	I	123	128	Right-handed alpha
Helix 40	AE4	I	131	135	Right-handed 310
Helix 41	AE5	I	137	141	Right-handed 310
Helix 42	AE6	I	207	209	Right-handed 310
Helix 43	AE7	J	97	101	Right-handed 310
Helix 44	AE8	J	123	128	Right-handed alpha
Helix 45	AE9	J	131	135	Right-handed 310
Helix 46	AF1	J	137	141	Right-handed 310
Helix 47	AF2	J	207	209	Right-handed 310
Helix 48	AF3	K	123	128	Right-handed alpha
Helix 49	AF4	K	131	135	Right-handed 310
Helix 50	AF5	K	137	141	Right-handed 310
Helix 51	AF6	K	207	209	Right-handed 310

There are 33 sheets in PDB entry 8UGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	47	first strand
Strand 2	A	228	241	anti-parallel
Strand 3	A	80	94	anti-parallel
Strand 4	A	184	191	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	228	241	anti-parallel
Strand 3	A	80	94	anti-parallel
Strand 4	A	196	200	anti-parallel
Strand 5	A	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	63	first strand
Strand 2	A	215	221	anti-parallel
Strand 3	A	103	114	anti-parallel
Strand 4	A	151	163	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	47	first strand
Strand 2	B	228	241	anti-parallel
Strand 3	B	80	94	anti-parallel
Strand 4	B	184	191	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	228	241	anti-parallel
Strand 3	B	80	94	anti-parallel
Strand 4	B	196	200	anti-parallel
Strand 5	B	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	63	first strand
Strand 2	B	215	221	anti-parallel
Strand 3	B	103	114	anti-parallel
Strand 4	B	151	163	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	47	first strand
Strand 2	C	232	241	anti-parallel
Strand 3	C	80	94	anti-parallel
Strand 4	C	184	191	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	228	229	anti-parallel
Strand 3	C	80	94	anti-parallel
Strand 4	C	196	200	anti-parallel
Strand 5	C	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	63	first strand
Strand 2	C	215	221	anti-parallel
Strand 3	C	104	114	anti-parallel
Strand 4	C	151	162	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	47	first strand
Strand 2	D	228	240	anti-parallel
Strand 3	D	80	94	anti-parallel
Strand 4	D	184	191	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	228	240	anti-parallel
Strand 3	D	80	94	anti-parallel
Strand 4	D	196	200	anti-parallel
Strand 5	D	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	63	first strand
Strand 2	D	215	221	anti-parallel
Strand 3	D	103	114	anti-parallel
Strand 4	D	151	163	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	47	first strand
Strand 2	E	228	241	anti-parallel
Strand 3	E	80	94	anti-parallel
Strand 4	E	184	191	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	228	241	anti-parallel
Strand 3	E	80	94	anti-parallel
Strand 4	E	196	200	anti-parallel
Strand 5	E	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	63	first strand
Strand 2	E	215	221	anti-parallel
Strand 3	E	103	114	anti-parallel
Strand 4	E	151	163	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	47	first strand
Strand 2	F	228	238	anti-parallel
Strand 3	F	80	94	anti-parallel
Strand 4	F	184	191	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	54	55	first strand
Strand 2	F	228	238	anti-parallel
Strand 3	F	80	94	anti-parallel
Strand 4	F	196	200	anti-parallel
Strand 5	F	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	63	first strand
Strand 2	F	215	221	anti-parallel
Strand 3	F	103	114	anti-parallel
Strand 4	F	151	163	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	47	first strand
Strand 2	G	228	241	anti-parallel
Strand 3	G	80	94	anti-parallel
Strand 4	G	184	191	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	55	first strand
Strand 2	G	228	241	anti-parallel
Strand 3	G	80	94	anti-parallel
Strand 4	G	196	200	anti-parallel
Strand 5	G	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	63	first strand
Strand 2	G	215	221	anti-parallel
Strand 3	G	103	114	anti-parallel
Strand 4	G	151	163	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	47	first strand
Strand 2	H	228	241	anti-parallel
Strand 3	H	80	94	anti-parallel
Strand 4	H	184	191	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	55	first strand
Strand 2	H	228	241	anti-parallel
Strand 3	H	80	94	anti-parallel
Strand 4	H	196	200	anti-parallel
Strand 5	H	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	63	first strand
Strand 2	H	215	221	anti-parallel
Strand 3	H	103	114	anti-parallel
Strand 4	H	151	163	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	41	47	first strand
Strand 2	I	228	240	anti-parallel
Strand 3	I	80	94	anti-parallel
Strand 4	I	184	191	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	41	47	first strand
Strand 2	I	228	240	anti-parallel
Strand 3	I	80	94	anti-parallel
Strand 4	I	196	200	anti-parallel
Strand 5	I	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	151	163	first strand
Strand 2	I	103	114	anti-parallel
Strand 3	I	215	221	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	41	47	first strand
Strand 2	J	228	241	anti-parallel
Strand 3	J	80	94	anti-parallel
Strand 4	J	184	191	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	54	55	first strand
Strand 2	J	228	241	anti-parallel
Strand 3	J	80	94	anti-parallel
Strand 4	J	196	200	anti-parallel
Strand 5	J	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	60	63	first strand
Strand 2	J	215	221	anti-parallel
Strand 3	J	103	114	anti-parallel
Strand 4	J	151	163	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	41	47	first strand
Strand 2	K	228	241	anti-parallel
Strand 3	K	80	94	anti-parallel
Strand 4	K	184	191	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	55	first strand
Strand 2	K	228	241	anti-parallel
Strand 3	K	80	94	anti-parallel
Strand 4	K	196	200	anti-parallel
Strand 5	K	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	60	63	first strand
Strand 2	K	215	221	anti-parallel
Strand 3	K	103	114	anti-parallel
Strand 4	K	151	163	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UGQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UGQ