Analysis of interatomic Contacts of Structural Units in PDB entry:
8UH3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UH3 entry

There are 5 chains in PDB entry 8UH3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 7	TRP 339
A	THR 4	PHE 354
D	ILE 19	CYS 361
E	GLN 3	GLU 246
G	ARG 13	ARG 62

There are 30 helices in PDB entry 8UH3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	7	26	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	A	6	32	Right-handed alpha
Helix 4	AA4	A	45	54	Right-handed alpha
Helix 5	AA5	A	208	213	Right-handed alpha
Helix 6	AA6	A	214	216	Right-handed 310
Helix 7	AA7	A	228	231	Right-handed 310
Helix 8	AA8	A	242	255	Right-handed alpha
Helix 9	AA9	A	270	281	Right-handed alpha
Helix 10	AB1	A	282	287	Right-handed alpha
Helix 11	AB2	A	295	310	Right-handed alpha
Helix 12	AB3	A	328	352	Right-handed alpha
Helix 13	AB4	D	20	50	Right-handed alpha
Helix 14	AB5	D	55	75	Right-handed alpha
Helix 15	AB6	D	75	86	Right-handed alpha
Helix 16	AB7	D	91	126	Right-handed alpha
Helix 17	AB8	D	126	134	Right-handed alpha
Helix 18	AB9	D	135	155	Right-handed alpha
Helix 19	AC1	D	155	161	Right-handed alpha
Helix 20	AC2	D	179	191	Right-handed alpha
Helix 21	AC3	D	191	210	Right-handed alpha
Helix 22	AC4	D	211	213	Right-handed 310
Helix 23	AC5	D	286	316	Right-handed alpha
Helix 24	AC6	D	322	346	Right-handed alpha
Helix 25	AC7	D	348	359	Right-handed alpha
Helix 26	AC8	E	53	56	Right-handed 310
Helix 27	AC9	E	87	91	Right-handed 310
Helix 28	AD1	E	220	224	Right-handed 310
Helix 29	AD2	G	14	23	Right-handed alpha
Helix 30	AD3	G	29	44	Right-handed alpha

There are 12 sheets in PDB entry 8UH3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	335	338	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	201	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	17	24	anti-parallel
Strand 3	E	78	84	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	141	first strand
Strand 2	E	155	161	anti-parallel
Strand 3	E	211	216	anti-parallel
Strand 4	E	204	207	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	148	first strand
Strand 2	E	243	246	parallel
Strand 3	E	225	231	anti-parallel
Strand 4	E	174	179	anti-parallel
Strand 5	E	186	190	anti-parallel
Strand 6	E	194	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UH3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UH3