Analysis of interatomic Contacts of Structural Units in PDB entry:
8UH6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UH6 entry

There are 3 chains in PDB entry 8UH6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	HIS 1140
B	PRO 44	THR 429
C	MET 1	LYS 277

There are 29 helices in PDB entry 8UH6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	776	780	Right-handed 310
Helix 2	AA2	A	985	990	Right-handed alpha
Helix 3	AA3	A	1018	1022	Right-handed 310
Helix 4	AA4	A	1044	1062	Right-handed alpha
Helix 5	AA5	A	1069	1075	Right-handed alpha
Helix 6	AA6	A	1091	1098	Right-handed alpha
Helix 7	AA7	A	1101	1109	Right-handed alpha
Helix 8	AA8	A	1115	1119	Right-handed 310
Helix 9	AA9	A	1128	1137	Right-handed alpha
Helix 10	AB1	B	51	57	Right-handed alpha
Helix 11	AB2	B	103	116	Right-handed alpha
Helix 12	AB3	B	200	207	Right-handed 310
Helix 13	AB4	B	219	232	Right-handed alpha
Helix 14	AB5	B	233	238	Right-handed 310
Helix 15	AB6	B	241	247	Right-handed alpha
Helix 16	AB7	B	249	265	Right-handed alpha
Helix 17	AB8	B	276	287	Right-handed alpha
Helix 18	AB9	B	291	301	Right-handed alpha
Helix 19	AC1	B	303	318	Right-handed alpha
Helix 20	AC2	B	335	337	Right-handed 310
Helix 21	AC3	C	3	16	Right-handed alpha
Helix 22	AC4	C	17	28	Right-handed alpha
Helix 23	AC5	C	42	46	Right-handed 310
Helix 24	AC6	C	90	104	Right-handed alpha
Helix 25	AC7	C	116	120	Right-handed 310
Helix 26	AC8	C	188	201	Right-handed alpha
Helix 27	AC9	C	222	237	Right-handed alpha
Helix 28	AD1	C	243	255	Right-handed alpha
Helix 29	AD2	C	261	275	Right-handed alpha

There are 22 sheets in PDB entry 8UH6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1004	1009	first strand
Strand 2	A	1025	1032	anti-parallel
Strand 3	A	1037	1042	anti-parallel
Strand 4	A	4	8	anti-parallel
Strand 5	A	1088	1090	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	21	first strand
Strand 2	A	30	35	anti-parallel
Strand 3	A	38	44	anti-parallel
Strand 4	A	49	55	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	67	first strand
Strand 2	A	76	80	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	97	105	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	124	first strand
Strand 2	A	130	134	anti-parallel
Strand 3	A	139	144	anti-parallel
Strand 4	A	155	158	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	169	first strand
Strand 2	A	177	184	anti-parallel
Strand 3	A	187	194	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	220	first strand
Strand 2	A	229	232	anti-parallel
Strand 3	A	237	241	anti-parallel
Strand 4	A	244	248	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	263	first strand
Strand 2	A	270	275	anti-parallel
Strand 3	A	279	285	anti-parallel
Strand 4	A	300	307	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	316	first strand
Strand 2	A	322	326	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	347	348	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	362	366	first strand
Strand 2	A	373	378	anti-parallel
Strand 3	A	386	392	anti-parallel
Strand 4	A	710	716	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	720	727	first strand
Strand 2	A	732	742	anti-parallel
Strand 3	A	785	795	anti-parallel
Strand 4	A	801	806	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	811	819	first strand
Strand 2	A	828	835	anti-parallel
Strand 3	A	845	854	anti-parallel
Strand 4	A	857	865	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	872	874	first strand
Strand 2	A	879	883	anti-parallel
Strand 3	A	887	893	anti-parallel
Strand 4	A	899	906	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	913	916	first strand
Strand 2	A	920	924	anti-parallel
Strand 3	A	930	935	anti-parallel
Strand 4	A	942	948	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	957	959	first strand
Strand 2	A	964	969	anti-parallel
Strand 3	A	973	978	anti-parallel
Strand 4	A	993	999	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1076	1077	first strand
Strand 2	A	1082	1083	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	82	first strand
Strand 2	B	179	184	anti-parallel
Strand 3	B	158	169	anti-parallel
Strand 4	B	96	98	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	82	first strand
Strand 2	B	179	184	anti-parallel
Strand 3	B	158	169	anti-parallel
Strand 4	B	133	143	anti-parallel
Strand 5	B	119	125	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	333	first strand
Strand 2	B	320	323	anti-parallel
Strand 3	B	422	424	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	350	first strand
Strand 2	B	356	362	anti-parallel
Strand 3	B	413	418	anti-parallel
Strand 4	B	397	403	anti-parallel
Strand 5	B	387	391	anti-parallel
Strand 6	B	368	370	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	C	83	85	anti-parallel
Strand 3	C	212	215	parallel
Strand 4	C	108	111	parallel
Strand 5	C	168	176	parallel
Strand 6	C	159	163	anti-parallel
Strand 7	C	141	143	anti-parallel
Strand 8	C	134	136	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	C	83	85	anti-parallel
Strand 3	C	212	215	parallel
Strand 4	C	108	111	parallel
Strand 5	C	168	176	parallel
Strand 6	C	155	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UH6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UH6