Analysis of interatomic Contacts of Structural Units in PDB entry:
8UI8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UI8 entry

There are 7 chains in PDB entry 8UI8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 866	PRO 1844
B	HIS 33	PRO 351
C	MET 1	GLU 339
D	LYS 36	CYS 363
E	SER 2	ASP 349
F	MET 1	SER 261
G	MET 1	SER 261

There are114 helices in PDB entry 8UI8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	940	955	Right-handed alpha
Helix 2	AA2	A	963	972	Right-handed alpha
Helix 3	AA3	A	1053	1058	Right-handed alpha
Helix 4	AA4	A	1062	1066	Right-handed 310
Helix 5	AA5	A	1069	1098	Right-handed alpha
Helix 6	AA6	A	1137	1150	Right-handed alpha
Helix 7	AA7	A	1163	1177	Right-handed alpha
Helix 8	AA8	A	1316	1327	Right-handed alpha
Helix 9	AA9	A	1340	1345	Right-handed alpha
Helix 10	AB1	A	1358	1373	Right-handed alpha
Helix 11	AB2	A	1378	1389	Right-handed alpha
Helix 12	AB3	A	1392	1406	Right-handed alpha
Helix 13	AB4	A	1457	1463	Right-handed alpha
Helix 14	AB5	A	1464	1468	Right-handed 310
Helix 15	AB6	A	1474	1481	Right-handed alpha
Helix 16	AB7	A	1485	1501	Right-handed alpha
Helix 17	AB8	A	1505	1510	Right-handed alpha
Helix 18	AB9	A	1510	1515	Right-handed alpha
Helix 19	AC1	A	1633	1663	Right-handed alpha
Helix 20	AC2	A	1699	1730	Right-handed alpha
Helix 21	AC3	A	1730	1738	Right-handed alpha
Helix 22	AC4	A	1742	1746	Right-handed 310
Helix 23	AC5	A	1750	1755	Right-handed alpha
Helix 24	AC6	A	1764	1780	Right-handed alpha
Helix 25	AC7	A	1781	1787	Right-handed 310
Helix 26	AC8	A	1790	1814	Right-handed alpha
Helix 27	AC9	A	1817	1822	Right-handed 310
Helix 28	AD1	A	1824	1828	Right-handed 310
Helix 29	AD2	A	1832	1840	Right-handed alpha
Helix 30	AD3	B	37	42	Right-handed alpha
Helix 31	AD4	B	46	50	Right-handed 310
Helix 32	AD5	B	53	67	Right-handed alpha
Helix 33	AD6	B	81	95	Right-handed alpha
Helix 34	AD7	B	97	101	Right-handed alpha
Helix 35	AD8	B	112	126	Right-handed alpha
Helix 36	AD9	B	147	161	Right-handed alpha
Helix 37	AE1	B	173	177	Right-handed 310
Helix 38	AE2	B	178	184	Right-handed alpha
Helix 39	AE3	B	194	207	Right-handed alpha
Helix 40	AE4	B	214	225	Right-handed alpha
Helix 41	AE5	B	228	243	Right-handed alpha
Helix 42	AE6	B	247	256	Right-handed alpha
Helix 43	AE7	B	259	272	Right-handed alpha
Helix 44	AE8	B	274	288	Right-handed alpha
Helix 45	AE9	B	291	305	Right-handed alpha
Helix 46	AF1	B	309	330	Right-handed alpha
Helix 47	AF2	B	333	350	Right-handed alpha
Helix 48	AF3	C	4	11	Right-handed alpha
Helix 49	AF4	C	21	26	Right-handed alpha
Helix 50	AF5	C	37	50	Right-handed alpha
Helix 51	AF6	C	66	78	Right-handed alpha
Helix 52	AF7	C	82	86	Right-handed alpha
Helix 53	AF8	C	98	103	Right-handed alpha
Helix 54	AF9	C	103	110	Right-handed alpha
Helix 55	AG1	C	127	130	Right-handed 310
Helix 56	AG2	C	131	145	Right-handed alpha
Helix 57	AG3	C	157	161	Right-handed 310
Helix 58	AG4	C	162	169	Right-handed alpha
Helix 59	AG5	C	178	194	Right-handed alpha
Helix 60	AG6	C	198	210	Right-handed alpha
Helix 61	AG7	C	212	228	Right-handed alpha
Helix 62	AG8	C	231	240	Right-handed alpha
Helix 63	AG9	C	243	257	Right-handed alpha
Helix 64	AH1	C	258	274	Right-handed alpha
Helix 65	AH2	C	276	289	Right-handed alpha
Helix 66	AH3	C	294	314	Right-handed alpha
Helix 67	AH4	C	317	339	Right-handed alpha
Helix 68	AH5	D	39	44	Right-handed alpha
Helix 69	AH6	D	56	68	Right-handed alpha
Helix 70	AH7	D	83	96	Right-handed alpha
Helix 71	AH8	D	97	104	Right-handed alpha
Helix 72	AH9	D	116	129	Right-handed alpha
Helix 73	AI1	D	151	155	Right-handed 310
Helix 74	AI2	D	156	170	Right-handed alpha
Helix 75	AI3	D	182	186	Right-handed 310
Helix 76	AI4	D	187	192	Right-handed alpha
Helix 77	AI5	D	203	219	Right-handed alpha
Helix 78	AI6	D	223	235	Right-handed alpha
Helix 79	AI7	D	237	253	Right-handed alpha
Helix 80	AI8	D	258	267	Right-handed alpha
Helix 81	AI9	D	270	284	Right-handed alpha
Helix 82	AJ1	D	285	298	Right-handed alpha
Helix 83	AJ2	D	302	315	Right-handed alpha
Helix 84	AJ3	D	320	340	Right-handed alpha
Helix 85	AJ4	D	343	361	Right-handed alpha
Helix 86	AJ5	E	3	8	Right-handed alpha
Helix 87	AJ6	E	12	16	Right-handed 310
Helix 88	AJ7	E	19	32	Right-handed alpha
Helix 89	AJ8	E	47	60	Right-handed alpha
Helix 90	AJ9	E	61	66	Right-handed 310
Helix 91	AK1	E	96	102	Right-handed 310
Helix 92	AK2	E	103	122	Right-handed alpha
Helix 93	AK3	E	137	140	Right-handed 310
Helix 94	AK4	E	141	155	Right-handed alpha
Helix 95	AK5	E	172	177	Right-handed alpha
Helix 96	AK6	E	188	204	Right-handed alpha
Helix 97	AK7	E	208	219	Right-handed alpha
Helix 98	AK8	E	222	237	Right-handed alpha
Helix 99	AK9	E	249	265	Right-handed alpha
Helix 100	AL1	E	267	284	Right-handed alpha
Helix 101	AL2	E	287	300	Right-handed alpha
Helix 102	AL3	E	304	325	Right-handed alpha
Helix 103	AL4	E	327	349	Right-handed alpha
Helix 104	AL5	F	9	19	Right-handed alpha
Helix 105	AL6	F	55	57	Right-handed 310
Helix 106	AL7	F	72	79	Right-handed alpha
Helix 107	AL8	F	141	155	Right-handed alpha
Helix 108	AL9	F	208	217	Right-handed alpha
Helix 109	AM1	F	218	222	Right-handed 310
Helix 110	AM2	G	8	19	Right-handed alpha
Helix 111	AM3	G	72	80	Right-handed alpha
Helix 112	AM4	G	141	153	Right-handed alpha
Helix 113	AM5	G	209	217	Right-handed alpha
Helix 114	AM6	G	218	222	Right-handed 310

There are 12 sheets in PDB entry 8UI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	872	873	first strand
Strand 2	D	195	198	parallel
Strand 3	D	74	77	parallel
Strand 4	D	174	180	parallel
Strand 5	D	145	150	parallel
Strand 6	D	105	109	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1151	1156	first strand
Strand 2	A	1299	1305	parallel
Strand 3	A	1332	1336	parallel
Strand 4	A	1127	1131	parallel
Strand 5	A	1350	1353	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1519	1521	first strand
Strand 2	A	1747	1749	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	136	141	parallel
Strand 3	B	165	171	parallel
Strand 4	B	72	75	parallel
Strand 5	B	186	189	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	91	first strand
Strand 2	C	120	125	parallel
Strand 3	C	149	154	parallel
Strand 4	C	56	59	parallel
Strand 5	C	170	173	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	229	230	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	74	first strand
Strand 2	E	82	88	anti-parallel
Strand 3	E	92	95	anti-parallel
Strand 4	E	131	135	parallel
Strand 5	E	160	165	parallel
Strand 6	E	38	41	parallel
Strand 7	E	180	183	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	62	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	87	92	anti-parallel
Strand 4	F	98	104	anti-parallel
Strand 5	F	110	117	anti-parallel
Strand 6	G	178	182	anti-parallel
Strand 7	G	167	171	anti-parallel
Strand 8	G	157	162	anti-parallel
Strand 9	G	204	208	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	25	30	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	46	53	anti-parallel
Strand 5	F	246	251	anti-parallel
Strand 6	F	235	240	anti-parallel
Strand 7	F	224	229	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	196	197	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	177	180	first strand
Strand 2	F	167	172	anti-parallel
Strand 3	F	158	162	anti-parallel
Strand 4	F	204	207	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	62	first strand
Strand 2	G	2	6	anti-parallel
Strand 3	G	88	92	anti-parallel
Strand 4	G	99	103	anti-parallel
Strand 5	G	112	116	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	71	first strand
Strand 2	G	25	30	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	46	53	anti-parallel
Strand 5	G	246	251	anti-parallel
Strand 6	G	235	240	anti-parallel
Strand 7	G	224	229	anti-parallel
Strand 8	G	135	140	anti-parallel
Strand 9	G	196	197	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UI8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UI8