Analysis of interatomic Contacts of Structural Units in PDB entry:
8UIB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UIB entry

There are 3 chains in PDB entry 8UIB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	LYS 2	LEU 505
K	GLU 3	LEU 446
T	CYS 5	TYR 821

There are 72 helices in PDB entry 8UIB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	32	38	Right-handed 310
Helix 2	AA2	I	109	115	Right-handed alpha
Helix 3	AA3	I	126	146	Right-handed alpha
Helix 4	AA4	I	183	192	Right-handed alpha
Helix 5	AA5	I	273	290	Right-handed alpha
Helix 6	AA6	I	303	320	Right-handed alpha
Helix 7	AA7	I	336	340	Right-handed 310
Helix 8	AA8	I	382	386	Right-handed 310
Helix 9	AA9	I	404	413	Right-handed alpha
Helix 10	AB1	I	433	437	Right-handed 310
Helix 11	AB2	I	453	465	Right-handed alpha
Helix 12	AB3	I	474	476	Right-handed 310
Helix 13	AB4	K	57	60	Right-handed alpha
Helix 14	AB5	K	70	75	Right-handed alpha
Helix 15	AB6	K	76	81	Right-handed alpha
Helix 16	AB7	K	95	114	Right-handed alpha
Helix 17	AB8	K	122	131	Right-handed alpha
Helix 18	AB9	K	216	228	Right-handed alpha
Helix 19	AC1	K	244	259	Right-handed alpha
Helix 20	AC2	K	276	288	Right-handed alpha
Helix 21	AC3	K	325	329	Right-handed 310
Helix 22	AC4	K	331	341	Right-handed alpha
Helix 23	AC5	K	358	366	Right-handed alpha
Helix 24	AC6	K	394	406	Right-handed alpha
Helix 25	AC7	K	416	430	Right-handed alpha
Helix 26	AC8	T	8	17	Right-handed alpha
Helix 27	AC9	T	25	40	Right-handed alpha
Helix 28	AD1	T	44	52	Right-handed alpha
Helix 29	AD2	T	53	65	Right-handed alpha
Helix 30	AD3	T	69	84	Right-handed alpha
Helix 31	AD4	T	86	93	Right-handed alpha
Helix 32	AD5	T	98	104	Right-handed alpha
Helix 33	AD6	T	107	115	Right-handed 310
Helix 34	AD7	T	116	131	Right-handed alpha
Helix 35	AD8	T	133	143	Right-handed alpha
Helix 36	AD9	T	146	153	Right-handed alpha
Helix 37	AE1	T	157	176	Right-handed alpha
Helix 38	AE2	T	192	207	Right-handed alpha
Helix 39	AE3	T	210	228	Right-handed alpha
Helix 40	AE4	T	230	246	Right-handed alpha
Helix 41	AE5	T	247	250	Right-handed 310
Helix 42	AE6	T	255	267	Right-handed alpha
Helix 43	AE7	T	276	278	Right-handed 310
Helix 44	AE8	T	279	290	Right-handed alpha
Helix 45	AE9	T	294	304	Right-handed alpha
Helix 46	AF1	T	309	322	Right-handed alpha
Helix 47	AF2	T	323	325	Right-handed 310
Helix 48	AF3	T	348	355	Right-handed alpha
Helix 49	AF4	T	357	376	Right-handed alpha
Helix 50	AF5	T	386	402	Right-handed alpha
Helix 51	AF6	T	409	419	Right-handed alpha
Helix 52	AF7	T	422	436	Right-handed alpha
Helix 53	AF8	T	442	458	Right-handed alpha
Helix 54	AF9	T	463	479	Right-handed alpha
Helix 55	AG1	T	494	510	Right-handed alpha
Helix 56	AG2	T	513	528	Right-handed alpha
Helix 57	AG3	T	534	539	Right-handed alpha
Helix 58	AG4	T	546	551	Right-handed alpha
Helix 59	AG5	T	552	556	Right-handed 310
Helix 60	AG6	T	558	567	Right-handed alpha
Helix 61	AG7	T	567	575	Right-handed alpha
Helix 62	AG8	T	591	603	Right-handed alpha
Helix 63	AG9	T	606	623	Right-handed alpha
Helix 64	AH1	T	624	628	Right-handed 310
Helix 65	AH2	T	630	644	Right-handed alpha
Helix 66	AH3	T	647	666	Right-handed alpha
Helix 67	AH4	T	693	697	Right-handed 310
Helix 68	AH5	T	702	709	Right-handed alpha
Helix 69	AH6	T	712	725	Right-handed alpha
Helix 70	AH7	T	774	779	Right-handed alpha
Helix 71	AH8	T	780	788	Right-handed alpha
Helix 72	AH9	T	798	808	Right-handed alpha

There are 12 sheets in PDB entry 8UIB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	4	first strand
Strand 2	I	502	503	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	24	25	first strand
Strand 2	I	98	100	parallel
Strand 3	I	122	125	parallel
Strand 4	I	194	196	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	69	71	first strand
Strand 2	I	74	76	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	210	215	first strand
Strand 2	I	223	228	anti-parallel
Strand 3	I	234	235	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	260	262	first strand
Strand 2	I	468	472	parallel
Strand 3	I	496	497	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	295	296	first strand
Strand 2	I	392	393	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	326	329	first strand
Strand 2	I	373	376	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	419	422	first strand
Strand 2	I	442	445	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	90	91	first strand
Strand 2	K	61	65	parallel
Strand 3	K	27	30	parallel
Strand 4	K	20	24	anti-parallel
Strand 5	K	4	8	anti-parallel
Strand 6	K	444	446	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	141	143	first strand
Strand 2	K	148	151	anti-parallel
Strand 3	K	164	168	anti-parallel
Strand 4	K	171	175	anti-parallel
Strand 5	K	199	202	parallel
Strand 6	K	409	412	parallel
Strand 7	K	434	436	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	319	323	first strand
Strand 2	K	234	238	parallel
Strand 3	K	347	350	parallel
Strand 4	K	383	386	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	369	370	first strand
Strand 2	K	378	379	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UIB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UIB