Analysis of interatomic Contacts of Structural Units in PDB entry:
8UID

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UID entry

There are 4 chains in PDB entry 8UID (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	GLU 739
B	GLU 746	LEU 972
C	THR 2	GLU 739
D	GLU 746	LEU 972

There are 42 helices in PDB entry 8UID. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	16	Right-handed 310
Helix 2	AA2	A	17	28	Right-handed alpha
Helix 3	AA3	A	38	43	Right-handed alpha
Helix 4	AA4	A	67	78	Right-handed alpha
Helix 5	AA5	A	94	99	Right-handed 310
Helix 6	AA6	A	102	107	Right-handed alpha
Helix 7	AA7	A	114	138	Right-handed alpha
Helix 8	AA8	A	154	169	Right-handed alpha
Helix 9	AA9	A	197	211	Right-handed alpha
Helix 10	AB1	A	243	258	Right-handed alpha
Helix 11	AB2	A	298	314	Right-handed alpha
Helix 12	AB3	A	314	320	Right-handed alpha
Helix 13	AB4	A	484	489	Right-handed alpha
Helix 14	AB5	A	598	603	Right-handed 310
Helix 15	AB6	A	619	625	Right-handed 310
Helix 16	AB7	A	722	729	Right-handed alpha
Helix 17	AB8	A	731	738	Right-handed alpha
Helix 18	AB9	B	804	807	Right-handed 310
Helix 19	AC1	B	844	849	Right-handed alpha
Helix 20	AC2	B	850	855	Right-handed alpha
Helix 21	AC3	B	868	871	Right-handed 310
Helix 22	AC4	C	14	16	Right-handed 310
Helix 23	AC5	C	17	28	Right-handed alpha
Helix 24	AC6	C	38	43	Right-handed alpha
Helix 25	AC7	C	67	78	Right-handed alpha
Helix 26	AC8	C	94	99	Right-handed 310
Helix 27	AC9	C	102	107	Right-handed alpha
Helix 28	AD1	C	114	138	Right-handed alpha
Helix 29	AD2	C	154	169	Right-handed alpha
Helix 30	AD3	C	197	211	Right-handed alpha
Helix 31	AD4	C	243	258	Right-handed alpha
Helix 32	AD5	C	298	314	Right-handed alpha
Helix 33	AD6	C	314	320	Right-handed alpha
Helix 34	AD7	C	484	489	Right-handed alpha
Helix 35	AD8	C	598	603	Right-handed 310
Helix 36	AD9	C	619	625	Right-handed 310
Helix 37	AE1	C	722	729	Right-handed alpha
Helix 38	AE2	C	731	738	Right-handed alpha
Helix 39	AE3	D	804	807	Right-handed 310
Helix 40	AE4	D	844	849	Right-handed alpha
Helix 41	AE5	D	850	855	Right-handed alpha
Helix 42	AE6	D	868	871	Right-handed 310

There are 28 sheets in PDB entry 8UID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	175	first strand
Strand 2	A	141	145	parallel
Strand 3	A	81	85	parallel
Strand 4	A	32	36	parallel
Strand 5	A	4	7	parallel
Strand 6	A	262	266	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	329	first strand
Strand 2	A	361	362	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	340	first strand
Strand 2	A	345	351	anti-parallel
Strand 3	A	380	389	anti-parallel
Strand 4	A	395	400	anti-parallel
Strand 5	A	425	432	anti-parallel
Strand 6	A	453	459	anti-parallel
Strand 7	A	445	450	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	359	first strand
Strand 2	A	374	376	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	410	first strand
Strand 2	A	413	420	anti-parallel
Strand 3	A	476	483	parallel
Strand 4	A	464	471	anti-parallel
Strand 5	A	436	442	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	494	first strand
Strand 2	A	497	500	anti-parallel
Strand 3	A	528	533	anti-parallel
Strand 4	A	557	562	anti-parallel
Strand 5	A	550	554	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	510	first strand
Strand 2	A	516	522	anti-parallel
Strand 3	B	964	971	anti-parallel
Strand 4	A	540	543	anti-parallel
Strand 5	A	546	548	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	574	first strand
Strand 2	B	951	959	anti-parallel
Strand 3	B	865	866	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	574	first strand
Strand 2	B	951	959	anti-parallel
Strand 3	B	893	900	anti-parallel
Strand 4	B	924	927	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	859	861	first strand
Strand 2	A	579	583	anti-parallel
Strand 3	B	874	883	anti-parallel
Strand 4	B	935	945	anti-parallel
Strand 5	B	902	908	anti-parallel
Strand 6	B	911	917	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	593	first strand
Strand 2	B	836	842	anti-parallel
Strand 3	A	608	618	anti-parallel
Strand 4	A	666	676	anti-parallel
Strand 5	A	640	644	anti-parallel
Strand 6	A	647	652	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	655	659	first strand
Strand 2	A	630	636	anti-parallel
Strand 3	A	691	697	anti-parallel
Strand 4	B	832	833	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	704	first strand
Strand 2	B	826	830	anti-parallel
Strand 3	B	768	772	anti-parallel
Strand 4	B	801	802	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	709	710	first strand
Strand 2	B	754	762	anti-parallel
Strand 3	B	810	818	anti-parallel
Strand 4	B	785	789	anti-parallel
Strand 5	B	792	796	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	141	145	parallel
Strand 3	C	81	85	parallel
Strand 4	C	32	36	parallel
Strand 5	C	4	7	parallel
Strand 6	C	262	266	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	329	first strand
Strand 2	C	361	362	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	340	first strand
Strand 2	C	345	351	anti-parallel
Strand 3	C	380	389	anti-parallel
Strand 4	C	395	400	anti-parallel
Strand 5	C	425	432	anti-parallel
Strand 6	C	453	459	anti-parallel
Strand 7	C	445	450	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	359	first strand
Strand 2	C	374	376	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	410	first strand
Strand 2	C	413	420	anti-parallel
Strand 3	C	476	483	parallel
Strand 4	C	464	471	anti-parallel
Strand 5	C	436	442	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	494	first strand
Strand 2	C	497	500	anti-parallel
Strand 3	C	528	533	anti-parallel
Strand 4	C	557	562	anti-parallel
Strand 5	C	550	554	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	509	510	first strand
Strand 2	C	516	522	anti-parallel
Strand 3	D	964	971	anti-parallel
Strand 4	C	540	543	anti-parallel
Strand 5	C	546	548	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	573	574	first strand
Strand 2	D	951	959	anti-parallel
Strand 3	D	865	866	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	573	574	first strand
Strand 2	D	951	959	anti-parallel
Strand 3	D	893	900	anti-parallel
Strand 4	D	924	927	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	859	861	first strand
Strand 2	C	579	583	anti-parallel
Strand 3	D	874	883	anti-parallel
Strand 4	D	935	945	anti-parallel
Strand 5	D	902	908	anti-parallel
Strand 6	D	911	917	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	591	593	first strand
Strand 2	D	836	842	anti-parallel
Strand 3	C	608	618	anti-parallel
Strand 4	C	666	676	anti-parallel
Strand 5	C	640	644	anti-parallel
Strand 6	C	647	652	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	655	659	first strand
Strand 2	C	630	636	anti-parallel
Strand 3	C	691	697	anti-parallel
Strand 4	D	832	833	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	701	704	first strand
Strand 2	D	826	830	anti-parallel
Strand 3	D	768	772	anti-parallel
Strand 4	D	801	802	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	709	710	first strand
Strand 2	D	754	762	anti-parallel
Strand 3	D	810	818	anti-parallel
Strand 4	D	785	789	anti-parallel
Strand 5	D	792	796	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UID

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UID