Analysis of interatomic Contacts of Structural Units in PDB entry:
8UII

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UII entry

There are 8 chains in PDB entry 8UII (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 868	PRO 1844
B	HIS 33	PRO 351
C	ILE 17	ALA 340
D	LYS 36	CYS 363
E	SER 2	ASP 349
F	MET 1	SER 261
G	MET 1	SER 261
H	MET 1	SER 261

There are118 helices in PDB entry 8UII. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	877	881	Right-handed 310
Helix 2	AA2	A	890	895	Right-handed alpha
Helix 3	AA3	A	940	955	Right-handed alpha
Helix 4	AA4	A	963	972	Right-handed alpha
Helix 5	AA5	A	1053	1058	Right-handed alpha
Helix 6	AA6	A	1069	1098	Right-handed alpha
Helix 7	AA7	A	1137	1149	Right-handed alpha
Helix 8	AA8	A	1163	1177	Right-handed alpha
Helix 9	AA9	A	1316	1327	Right-handed alpha
Helix 10	AB1	A	1340	1345	Right-handed alpha
Helix 11	AB2	A	1358	1373	Right-handed alpha
Helix 12	AB3	A	1378	1389	Right-handed alpha
Helix 13	AB4	A	1392	1406	Right-handed alpha
Helix 14	AB5	A	1457	1463	Right-handed alpha
Helix 15	AB6	A	1474	1481	Right-handed alpha
Helix 16	AB7	A	1485	1501	Right-handed alpha
Helix 17	AB8	A	1505	1510	Right-handed alpha
Helix 18	AB9	A	1510	1515	Right-handed alpha
Helix 19	AC1	A	1633	1663	Right-handed alpha
Helix 20	AC2	A	1698	1729	Right-handed alpha
Helix 21	AC3	A	1730	1737	Right-handed alpha
Helix 22	AC4	A	1741	1746	Right-handed alpha
Helix 23	AC5	A	1764	1779	Right-handed alpha
Helix 24	AC6	A	1783	1787	Right-handed 310
Helix 25	AC7	A	1790	1814	Right-handed alpha
Helix 26	AC8	A	1817	1821	Right-handed 310
Helix 27	AC9	A	1822	1827	Right-handed alpha
Helix 28	AD1	A	1832	1840	Right-handed alpha
Helix 29	AD2	B	37	42	Right-handed alpha
Helix 30	AD3	B	53	67	Right-handed alpha
Helix 31	AD4	B	81	95	Right-handed alpha
Helix 32	AD5	B	97	101	Right-handed alpha
Helix 33	AD6	B	112	126	Right-handed alpha
Helix 34	AD7	B	143	146	Right-handed 310
Helix 35	AD8	B	147	154	Right-handed alpha
Helix 36	AD9	B	156	161	Right-handed alpha
Helix 37	AE1	B	173	177	Right-handed 310
Helix 38	AE2	B	178	184	Right-handed alpha
Helix 39	AE3	B	194	208	Right-handed alpha
Helix 40	AE4	B	214	225	Right-handed alpha
Helix 41	AE5	B	228	243	Right-handed alpha
Helix 42	AE6	B	247	256	Right-handed alpha
Helix 43	AE7	B	259	272	Right-handed alpha
Helix 44	AE8	B	274	288	Right-handed alpha
Helix 45	AE9	B	291	305	Right-handed alpha
Helix 46	AF1	B	309	330	Right-handed alpha
Helix 47	AF2	B	333	350	Right-handed alpha
Helix 48	AF3	C	21	26	Right-handed alpha
Helix 49	AF4	C	30	34	Right-handed 310
Helix 50	AF5	C	38	50	Right-handed alpha
Helix 51	AF6	C	65	78	Right-handed alpha
Helix 52	AF7	C	82	86	Right-handed alpha
Helix 53	AF8	C	97	102	Right-handed alpha
Helix 54	AF9	C	103	111	Right-handed alpha
Helix 55	AG1	C	127	130	Right-handed 310
Helix 56	AG2	C	131	145	Right-handed alpha
Helix 57	AG3	C	157	161	Right-handed 310
Helix 58	AG4	C	162	169	Right-handed alpha
Helix 59	AG5	C	178	194	Right-handed alpha
Helix 60	AG6	C	198	210	Right-handed alpha
Helix 61	AG7	C	212	227	Right-handed alpha
Helix 62	AG8	C	231	239	Right-handed alpha
Helix 63	AG9	C	243	257	Right-handed alpha
Helix 64	AH1	C	258	274	Right-handed alpha
Helix 65	AH2	C	277	291	Right-handed alpha
Helix 66	AH3	C	294	312	Right-handed alpha
Helix 67	AH4	C	317	340	Right-handed alpha
Helix 68	AH5	D	39	44	Right-handed alpha
Helix 69	AH6	D	56	68	Right-handed alpha
Helix 70	AH7	D	83	96	Right-handed alpha
Helix 71	AH8	D	116	129	Right-handed alpha
Helix 72	AH9	D	152	155	Right-handed 310
Helix 73	AI1	D	156	170	Right-handed alpha
Helix 74	AI2	D	182	186	Right-handed 310
Helix 75	AI3	D	187	194	Right-handed alpha
Helix 76	AI4	D	203	219	Right-handed alpha
Helix 77	AI5	D	223	235	Right-handed alpha
Helix 78	AI6	D	237	253	Right-handed alpha
Helix 79	AI7	D	258	266	Right-handed alpha
Helix 80	AI8	D	270	284	Right-handed alpha
Helix 81	AI9	D	285	299	Right-handed alpha
Helix 82	AJ1	D	302	315	Right-handed alpha
Helix 83	AJ2	D	320	340	Right-handed alpha
Helix 84	AJ3	D	343	361	Right-handed alpha
Helix 85	AJ4	E	3	8	Right-handed alpha
Helix 86	AJ5	E	19	30	Right-handed alpha
Helix 87	AJ6	E	47	60	Right-handed alpha
Helix 88	AJ7	E	61	65	Right-handed 310
Helix 89	AJ8	E	96	102	Right-handed 310
Helix 90	AJ9	E	103	122	Right-handed alpha
Helix 91	AK1	E	137	140	Right-handed 310
Helix 92	AK2	E	141	155	Right-handed alpha
Helix 93	AK3	E	172	177	Right-handed alpha
Helix 94	AK4	E	188	202	Right-handed alpha
Helix 95	AK5	E	208	219	Right-handed alpha
Helix 96	AK6	E	222	237	Right-handed alpha
Helix 97	AK7	E	249	265	Right-handed alpha
Helix 98	AK8	E	267	283	Right-handed alpha
Helix 99	AK9	E	287	302	Right-handed alpha
Helix 100	AL1	E	306	325	Right-handed alpha
Helix 101	AL2	E	327	348	Right-handed alpha
Helix 102	AL3	F	8	19	Right-handed alpha
Helix 103	AL4	F	72	80	Right-handed alpha
Helix 104	AL5	F	141	153	Right-handed alpha
Helix 105	AL6	F	209	216	Right-handed alpha
Helix 106	AL7	F	217	222	Right-handed 310
Helix 107	AL8	G	9	17	Right-handed alpha
Helix 108	AL9	G	18	23	Right-handed alpha
Helix 109	AM1	G	72	80	Right-handed alpha
Helix 110	AM2	G	141	155	Right-handed alpha
Helix 111	AM3	G	209	217	Right-handed alpha
Helix 112	AM4	G	218	222	Right-handed 310
Helix 113	AM5	H	8	19	Right-handed alpha
Helix 114	AM6	H	55	57	Right-handed 310
Helix 115	AM7	H	72	79	Right-handed alpha
Helix 116	AM8	H	141	153	Right-handed alpha
Helix 117	AM9	H	209	217	Right-handed alpha
Helix 118	AN1	H	218	222	Right-handed 310

There are 14 sheets in PDB entry 8UII. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	872	873	first strand
Strand 2	D	195	198	parallel
Strand 3	D	74	77	parallel
Strand 4	D	175	180	parallel
Strand 5	D	146	150	parallel
Strand 6	D	105	109	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1151	1156	first strand
Strand 2	A	1299	1305	parallel
Strand 3	A	1332	1336	parallel
Strand 4	A	1127	1131	parallel
Strand 5	A	1350	1353	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1519	1521	first strand
Strand 2	A	1747	1749	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1683	1685	first strand
Strand 2	E	81	88	anti-parallel
Strand 3	E	68	75	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1683	1685	first strand
Strand 2	E	81	88	anti-parallel
Strand 3	E	92	95	anti-parallel
Strand 4	E	130	135	parallel
Strand 5	E	159	165	parallel
Strand 6	E	38	41	parallel
Strand 7	E	180	183	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	136	141	parallel
Strand 3	B	165	171	parallel
Strand 4	B	72	75	parallel
Strand 5	B	186	189	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	91	first strand
Strand 2	C	120	125	parallel
Strand 3	C	149	155	parallel
Strand 4	C	56	59	parallel
Strand 5	C	170	173	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	229	230	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	88	92	anti-parallel
Strand 4	F	98	104	anti-parallel
Strand 5	F	110	117	anti-parallel
Strand 6	G	178	182	anti-parallel
Strand 7	G	168	171	anti-parallel
Strand 8	G	157	162	anti-parallel
Strand 9	G	203	208	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	25	30	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	46	53	anti-parallel
Strand 5	F	245	251	anti-parallel
Strand 6	F	235	241	anti-parallel
Strand 7	F	224	229	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	196	197	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	203	208	first strand
Strand 2	F	157	162	anti-parallel
Strand 3	F	167	171	anti-parallel
Strand 4	F	178	181	anti-parallel
Strand 5	H	111	117	anti-parallel
Strand 6	H	98	104	anti-parallel
Strand 7	H	87	92	anti-parallel
Strand 8	H	2	6	anti-parallel
Strand 9	H	60	61	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	62	first strand
Strand 2	G	2	5	anti-parallel
Strand 3	G	88	92	anti-parallel
Strand 4	G	100	103	anti-parallel
Strand 5	G	110	116	anti-parallel
Strand 6	H	176	182	anti-parallel
Strand 7	H	166	172	anti-parallel
Strand 8	H	158	163	anti-parallel
Strand 9	H	203	207	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	71	first strand
Strand 2	G	25	30	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	46	53	anti-parallel
Strand 5	G	245	251	anti-parallel
Strand 6	G	235	241	anti-parallel
Strand 7	G	224	229	anti-parallel
Strand 8	G	135	140	anti-parallel
Strand 9	G	198	199	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	71	first strand
Strand 2	H	25	30	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	46	53	anti-parallel
Strand 5	H	245	251	anti-parallel
Strand 6	H	235	241	anti-parallel
Strand 7	H	224	229	anti-parallel
Strand 8	H	135	140	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UII

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UII