Analysis of interatomic Contacts of Structural Units in PDB entry:
8UIU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UIU entry

There are 3 chains in PDB entry 8UIU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 6	ASP 423
B	LYS 6	ASP 423
C	ILE 5	ASP 423

There are 54 helices in PDB entry 8UIU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	30	Right-handed alpha
Helix 2	AA2	A	54	64	Right-handed alpha
Helix 3	AA3	A	66	72	Right-handed alpha
Helix 4	AA4	A	96	98	Right-handed 310
Helix 5	AA5	A	109	123	Right-handed alpha
Helix 6	AA6	A	186	191	Right-handed alpha
Helix 7	AA7	A	249	270	Right-handed alpha
Helix 8	AA8	A	273	278	Right-handed alpha
Helix 9	AA9	A	282	286	Right-handed 310
Helix 10	AB1	A	309	314	Right-handed alpha
Helix 11	AB2	A	321	342	Right-handed alpha
Helix 12	AB3	A	347	352	Right-handed alpha
Helix 13	AB4	A	352	374	Right-handed alpha
Helix 14	AB5	A	375	377	Right-handed 310
Helix 15	AB6	A	381	394	Right-handed alpha
Helix 16	AB7	A	395	397	Right-handed 310
Helix 17	AB8	A	398	408	Right-handed alpha
Helix 18	AB9	A	416	420	Right-handed 310
Helix 19	AC1	B	18	30	Right-handed alpha
Helix 20	AC2	B	54	64	Right-handed alpha
Helix 21	AC3	B	66	72	Right-handed alpha
Helix 22	AC4	B	96	98	Right-handed 310
Helix 23	AC5	B	109	120	Right-handed alpha
Helix 24	AC6	B	186	191	Right-handed alpha
Helix 25	AC7	B	249	257	Right-handed alpha
Helix 26	AC8	B	258	270	Right-handed alpha
Helix 27	AC9	B	273	278	Right-handed alpha
Helix 28	AD1	B	282	286	Right-handed 310
Helix 29	AD2	B	309	314	Right-handed alpha
Helix 30	AD3	B	317	320	Right-handed 310
Helix 31	AD4	B	321	342	Right-handed alpha
Helix 32	AD5	B	347	352	Right-handed alpha
Helix 33	AD6	B	354	374	Right-handed alpha
Helix 34	AD7	B	375	377	Right-handed 310
Helix 35	AD8	B	381	395	Right-handed alpha
Helix 36	AD9	B	398	408	Right-handed alpha
Helix 37	AE1	B	416	420	Right-handed 310
Helix 38	AE2	C	18	30	Right-handed alpha
Helix 39	AE3	C	54	64	Right-handed alpha
Helix 40	AE4	C	66	73	Right-handed alpha
Helix 41	AE5	C	96	98	Right-handed 310
Helix 42	AE6	C	109	123	Right-handed alpha
Helix 43	AE7	C	186	191	Right-handed alpha
Helix 44	AE8	C	249	258	Right-handed alpha
Helix 45	AE9	C	258	270	Right-handed alpha
Helix 46	AF1	C	273	278	Right-handed alpha
Helix 47	AF2	C	282	286	Right-handed 310
Helix 48	AF3	C	309	314	Right-handed alpha
Helix 49	AF4	C	321	341	Right-handed alpha
Helix 50	AF5	C	347	352	Right-handed alpha
Helix 51	AF6	C	352	375	Right-handed alpha
Helix 52	AF7	C	381	395	Right-handed alpha
Helix 53	AF8	C	398	408	Right-handed alpha
Helix 54	AF9	C	416	420	Right-handed 310

There are 12 sheets in PDB entry 8UIU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	9	first strand
Strand 2	A	169	173	parallel
Strand 3	A	144	151	anti-parallel
Strand 4	A	134	140	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	131	first strand
Strand 2	A	35	39	parallel
Strand 3	A	12	15	parallel
Strand 4	A	176	179	parallel
Strand 5	A	305	307	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	105	107	anti-parallel
Strand 3	A	76	78	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	94	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	220	224	parallel
Strand 4	A	229	235	anti-parallel
Strand 5	A	239	247	anti-parallel
Strand 6	A	195	210	anti-parallel
Strand 7	A	287	296	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	130	first strand
Strand 2	B	35	38	parallel
Strand 3	B	12	15	parallel
Strand 4	B	176	179	parallel
Strand 5	B	305	307	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	105	107	anti-parallel
Strand 3	B	76	78	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	94	first strand
Strand 2	B	80	85	anti-parallel
Strand 3	B	221	224	parallel
Strand 4	B	229	235	anti-parallel
Strand 5	B	239	247	anti-parallel
Strand 6	B	195	210	anti-parallel
Strand 7	B	287	296	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	140	first strand
Strand 2	B	144	151	anti-parallel
Strand 3	B	170	173	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	130	first strand
Strand 2	C	35	38	parallel
Strand 3	C	12	15	parallel
Strand 4	C	176	179	parallel
Strand 5	C	305	307	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	105	107	anti-parallel
Strand 3	C	76	78	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	94	first strand
Strand 2	C	80	85	anti-parallel
Strand 3	C	221	224	parallel
Strand 4	C	229	235	anti-parallel
Strand 5	C	239	247	anti-parallel
Strand 6	C	195	210	anti-parallel
Strand 7	C	287	296	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	140	first strand
Strand 2	C	144	151	anti-parallel
Strand 3	C	169	173	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UIU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UIU