Analysis of interatomic Contacts of Structural Units in PDB entry:
8UJA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UJA entry

There are 8 chains in PDB entry 8UJA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 108
B	MET 9	PHE 257
C	MET 1	LEU 108
D	MET 9	PHE 257
E	MET 1	LEU 108
F	MET 9	PHE 257
G	MET 1	LEU 108
H	MET 9	ALA 142

There are152 helices in PDB entry 8UJA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	11	Right-handed 310
Helix 2	AA2	A	12	27	Right-handed alpha
Helix 3	AA3	A	38	45	Right-handed 310
Helix 4	AA4	A	50	60	Right-handed alpha
Helix 5	AA5	A	68	74	Right-handed alpha
Helix 6	AA6	A	77	81	Right-handed 310
Helix 7	AA7	A	90	101	Right-handed alpha
Helix 8	AA8	B	26	30	Right-handed 310
Helix 9	AA9	B	34	50	Right-handed alpha
Helix 10	AB1	B	72	79	Right-handed alpha
Helix 11	AB2	B	82	102	Right-handed alpha
Helix 12	AB3	B	117	126	Right-handed alpha
Helix 13	AB4	B	140	144	Right-handed 310
Helix 14	AB5	B	149	172	Right-handed alpha
Helix 15	AB6	B	177	183	Right-handed alpha
Helix 16	AB7	B	193	203	Right-handed alpha
Helix 17	AB8	B	204	220	Right-handed alpha
Helix 18	AB9	B	226	236	Right-handed alpha
Helix 19	AC1	B	239	252	Right-handed alpha
Helix 20	AC2	C	9	11	Right-handed 310
Helix 21	AC3	C	12	27	Right-handed alpha
Helix 22	AC4	C	38	45	Right-handed 310
Helix 23	AC5	C	50	60	Right-handed alpha
Helix 24	AC6	C	68	74	Right-handed alpha
Helix 25	AC7	C	77	81	Right-handed 310
Helix 26	AC8	C	90	101	Right-handed alpha
Helix 27	AC9	D	26	30	Right-handed 310
Helix 28	AD1	D	34	50	Right-handed alpha
Helix 29	AD2	D	72	79	Right-handed alpha
Helix 30	AD3	D	82	102	Right-handed alpha
Helix 31	AD4	D	117	126	Right-handed alpha
Helix 32	AD5	D	140	144	Right-handed 310
Helix 33	AD6	D	149	172	Right-handed alpha
Helix 34	AD7	D	177	183	Right-handed alpha
Helix 35	AD8	D	193	203	Right-handed alpha
Helix 36	AD9	D	204	220	Right-handed alpha
Helix 37	AE1	D	226	236	Right-handed alpha
Helix 38	AE2	D	239	251	Right-handed alpha
Helix 39	AE3	E	9	11	Right-handed 310
Helix 40	AE4	E	12	27	Right-handed alpha
Helix 41	AE5	E	38	45	Right-handed 310
Helix 42	AE6	E	50	60	Right-handed alpha
Helix 43	AE7	E	68	74	Right-handed alpha
Helix 44	AE8	E	77	81	Right-handed 310
Helix 45	AE9	E	90	101	Right-handed alpha
Helix 46	AF1	F	26	30	Right-handed 310
Helix 47	AF2	F	34	50	Right-handed alpha
Helix 48	AF3	F	72	79	Right-handed alpha
Helix 49	AF4	F	82	102	Right-handed alpha
Helix 50	AF5	F	117	126	Right-handed alpha
Helix 51	AF6	F	140	144	Right-handed 310
Helix 52	AF7	F	149	172	Right-handed alpha
Helix 53	AF8	F	177	183	Right-handed alpha
Helix 54	AF9	F	193	203	Right-handed alpha
Helix 55	AG1	F	204	220	Right-handed alpha
Helix 56	AG2	F	226	236	Right-handed alpha
Helix 57	AG3	F	239	252	Right-handed alpha
Helix 58	AG4	G	9	11	Right-handed 310
Helix 59	AG5	G	12	27	Right-handed alpha
Helix 60	AG6	G	38	45	Right-handed 310
Helix 61	AG7	G	50	60	Right-handed alpha
Helix 62	AG8	G	68	74	Right-handed alpha
Helix 63	AG9	G	77	81	Right-handed 310
Helix 64	AH1	G	90	101	Right-handed alpha
Helix 65	AH2	H	26	30	Right-handed 310
Helix 66	AH3	H	34	50	Right-handed alpha
Helix 67	AH4	H	72	79	Right-handed alpha
Helix 68	AH5	H	82	102	Right-handed alpha
Helix 69	AH6	H	117	126	Right-handed alpha
Helix 70	AH7	H	140	144	Right-handed 310
Helix 71	AH8	H	149	172	Right-handed alpha
Helix 72	AH9	H	177	183	Right-handed alpha
Helix 73	AI1	H	193	203	Right-handed alpha
Helix 74	AI2	H	204	220	Right-handed alpha
Helix 75	AI3	H	226	236	Right-handed alpha
Helix 76	AI4	H	239	252	Right-handed alpha
Helix 77	AI5	I	9	11	Right-handed 310
Helix 78	AI6	I	12	27	Right-handed alpha
Helix 79	AI7	I	38	45	Right-handed 310
Helix 80	AI8	I	50	60	Right-handed alpha
Helix 81	AI9	I	68	74	Right-handed alpha
Helix 82	AJ1	I	77	81	Right-handed 310
Helix 83	AJ2	I	90	101	Right-handed alpha
Helix 84	AJ3	J	26	30	Right-handed 310
Helix 85	AJ4	J	34	50	Right-handed alpha
Helix 86	AJ5	J	72	79	Right-handed alpha
Helix 87	AJ6	J	82	102	Right-handed alpha
Helix 88	AJ7	J	117	126	Right-handed alpha
Helix 89	AJ8	J	140	144	Right-handed 310
Helix 90	AJ9	J	149	172	Right-handed alpha
Helix 91	AK1	J	177	183	Right-handed alpha
Helix 92	AK2	J	193	203	Right-handed alpha
Helix 93	AK3	J	204	220	Right-handed alpha
Helix 94	AK4	J	226	236	Right-handed alpha
Helix 95	AK5	J	239	252	Right-handed alpha
Helix 96	AK6	K	9	11	Right-handed 310
Helix 97	AK7	K	12	27	Right-handed alpha
Helix 98	AK8	K	38	45	Right-handed 310
Helix 99	AK9	K	50	60	Right-handed alpha
Helix 100	AL1	K	68	74	Right-handed alpha
Helix 101	AL2	K	77	81	Right-handed 310
Helix 102	AL3	K	90	101	Right-handed alpha
Helix 103	AL4	L	26	30	Right-handed 310
Helix 104	AL5	L	34	50	Right-handed alpha
Helix 105	AL6	L	72	79	Right-handed alpha
Helix 106	AL7	L	82	102	Right-handed alpha
Helix 107	AL8	L	117	126	Right-handed alpha
Helix 108	AL9	L	140	144	Right-handed 310
Helix 109	AM1	L	149	172	Right-handed alpha
Helix 110	AM2	L	177	183	Right-handed alpha
Helix 111	AM3	L	193	203	Right-handed alpha
Helix 112	AM4	L	204	220	Right-handed alpha
Helix 113	AM5	L	226	236	Right-handed alpha
Helix 114	AM6	L	239	252	Right-handed alpha
Helix 115	AM7	M	9	11	Right-handed 310
Helix 116	AM8	M	12	27	Right-handed alpha
Helix 117	AM9	M	38	45	Right-handed 310
Helix 118	AN1	M	50	60	Right-handed alpha
Helix 119	AN2	M	68	74	Right-handed alpha
Helix 120	AN3	M	77	81	Right-handed 310
Helix 121	AN4	M	90	101	Right-handed alpha
Helix 122	AN5	N	26	30	Right-handed 310
Helix 123	AN6	N	34	50	Right-handed alpha
Helix 124	AN7	N	72	79	Right-handed alpha
Helix 125	AN8	N	82	102	Right-handed alpha
Helix 126	AN9	N	117	126	Right-handed alpha
Helix 127	AO1	N	140	144	Right-handed 310
Helix 128	AO2	N	149	172	Right-handed alpha
Helix 129	AO3	N	177	183	Right-handed alpha
Helix 130	AO4	N	193	203	Right-handed alpha
Helix 131	AO5	N	204	220	Right-handed alpha
Helix 132	AO6	N	226	236	Right-handed alpha
Helix 133	AO7	N	239	252	Right-handed alpha
Helix 134	AO8	O	9	11	Right-handed 310
Helix 135	AO9	O	12	27	Right-handed alpha
Helix 136	AP1	O	38	45	Right-handed 310
Helix 137	AP2	O	50	60	Right-handed alpha
Helix 138	AP3	O	68	74	Right-handed alpha
Helix 139	AP4	O	77	81	Right-handed 310
Helix 140	AP5	O	90	101	Right-handed alpha
Helix 141	AP6	P	26	30	Right-handed 310
Helix 142	AP7	P	34	50	Right-handed alpha
Helix 143	AP8	P	72	79	Right-handed alpha
Helix 144	AP9	P	82	102	Right-handed alpha
Helix 145	AQ1	P	117	126	Right-handed alpha
Helix 146	AQ2	P	140	144	Right-handed 310
Helix 147	AQ3	P	149	172	Right-handed alpha
Helix 148	AQ4	P	177	183	Right-handed alpha
Helix 149	AQ5	P	193	203	Right-handed alpha
Helix 150	AQ6	P	204	220	Right-handed alpha
Helix 151	AQ7	P	226	236	Right-handed alpha
Helix 152	AQ8	P	239	251	Right-handed alpha

There are 24 sheets in PDB entry 8UJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	88	first strand
Strand 2	A	63	67	parallel
Strand 3	A	31	36	parallel
Strand 4	A	2	7	parallel
Strand 5	A	104	108	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	16	first strand
Strand 2	B	19	24	anti-parallel
Strand 3	B	56	61	parallel
Strand 4	B	107	111	parallel
Strand 5	B	128	131	parallel
Strand 6	B	188	189	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	B	136	138	parallel
Strand 3	B	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	88	first strand
Strand 2	C	63	67	parallel
Strand 3	C	31	36	parallel
Strand 4	C	2	7	parallel
Strand 5	C	104	108	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	16	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	56	61	parallel
Strand 4	D	107	111	parallel
Strand 5	D	128	131	parallel
Strand 6	D	188	189	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	116	first strand
Strand 2	D	136	138	parallel
Strand 3	D	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	88	first strand
Strand 2	E	63	67	parallel
Strand 3	E	31	36	parallel
Strand 4	E	2	7	parallel
Strand 5	E	104	108	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	16	first strand
Strand 2	F	19	24	anti-parallel
Strand 3	F	56	61	parallel
Strand 4	F	107	111	parallel
Strand 5	F	128	131	parallel
Strand 6	F	188	189	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	116	first strand
Strand 2	F	136	138	parallel
Strand 3	F	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	88	first strand
Strand 2	G	63	67	parallel
Strand 3	G	31	36	parallel
Strand 4	G	2	7	parallel
Strand 5	G	104	108	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	16	first strand
Strand 2	H	19	24	anti-parallel
Strand 3	H	56	61	parallel
Strand 4	H	107	111	parallel
Strand 5	H	128	131	parallel
Strand 6	H	188	189	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	114	116	first strand
Strand 2	H	136	138	parallel
Strand 3	H	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	86	88	first strand
Strand 2	I	63	67	parallel
Strand 3	I	31	36	parallel
Strand 4	I	2	7	parallel
Strand 5	I	104	108	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	16	first strand
Strand 2	J	19	24	anti-parallel
Strand 3	J	56	61	parallel
Strand 4	J	107	111	parallel
Strand 5	J	128	131	parallel
Strand 6	J	188	189	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	114	116	first strand
Strand 2	J	136	138	parallel
Strand 3	J	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	86	88	first strand
Strand 2	K	63	67	parallel
Strand 3	K	31	36	parallel
Strand 4	K	2	7	parallel
Strand 5	K	104	108	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	16	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	56	61	parallel
Strand 4	L	107	111	parallel
Strand 5	L	128	131	parallel
Strand 6	L	188	189	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	116	first strand
Strand 2	L	136	138	parallel
Strand 3	L	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	86	88	first strand
Strand 2	M	63	67	parallel
Strand 3	M	31	36	parallel
Strand 4	M	2	7	parallel
Strand 5	M	104	108	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	16	first strand
Strand 2	N	19	24	anti-parallel
Strand 3	N	56	61	parallel
Strand 4	N	107	111	parallel
Strand 5	N	128	131	parallel
Strand 6	N	188	189	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	114	116	first strand
Strand 2	N	136	138	parallel
Strand 3	N	175	176	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	86	88	first strand
Strand 2	O	63	67	parallel
Strand 3	O	31	36	parallel
Strand 4	O	2	7	parallel
Strand 5	O	104	108	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	11	16	first strand
Strand 2	P	19	24	anti-parallel
Strand 3	P	56	61	parallel
Strand 4	P	107	111	parallel
Strand 5	P	128	131	parallel
Strand 6	P	188	189	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	114	116	first strand
Strand 2	P	136	138	parallel
Strand 3	P	175	176	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UJA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UJA