Analysis of interatomic Contacts of Structural Units in PDB entry:
8UJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UJE entry

There is 1 chain in PDB entry 8UJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 103VAL 628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8UJE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
135 143Right-handed alpha
Helix 2
AA2
A
147 154Right-handed alpha
Helix 3
AA3
A
165 169Right-handed 310
Helix 4
AA4
A
191 206Right-handed alpha
Helix 5
AA5
A
207 209Right-handed 310
Helix 6
AA6
A
232 239Right-handed alpha
Helix 7
AA7
A
255 267Right-handed alpha
Helix 8
AA8
A
285 296Right-handed alpha
Helix 9
AA9
A
336 341Right-handed alpha
Helix 10
AB1
A
342 343Right-handed 310
Helix 11
AB2
A
344 348Right-handed 310
Helix 12
AB3
A
370 376Right-handed alpha
Helix 13
AB4
A
388 400Right-handed alpha
Helix 14
AB5
A
428 438Right-handed alpha
Helix 15
AB6
A
439 443Right-handed 310
Helix 16
AB7
A
444 452Right-handed alpha
Helix 17
AB8
A
460 475Right-handed alpha
Helix 18
AB9
A
478 486Right-handed alpha
Helix 19
AC1
A
494 498Right-handed 310
Helix 20
AC2
A
533 535Right-handed 310
Helix 21
AC3
A
569 572Right-handed 310
Helix 22
AC4
A
593 597Right-handed 310
Helix 23
AC5
A
607 611Right-handed 310
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There are 8 sheets in PDB entry 8UJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 250first strand
Strand 2
A
211 219parallel
Strand 3
A
181 187parallel
Strand 4
A
271 275parallel
Strand 5
A
366 369anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 281first strand
Strand 2
A
403 415anti-parallel
Strand 3
A
299 308parallel
Strand 4
A
315 316anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 281first strand
Strand 2
A
403 415anti-parallel
Strand 3
A
356 357anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 327first strand
Strand 2
A
331 334anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 528first strand
Strand 2
A
511 514anti-parallel
Strand 3
A
500 506anti-parallel
Strand 4
A
537 541anti-parallel
Strand 5
A
546 549anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 528first strand
Strand 2
A
511 514anti-parallel
Strand 3
A
500 506anti-parallel
Strand 4
A
613 616anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
555 557first strand
Strand 2
A
563 565anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 576first strand
Strand 2
A
582 584anti-parallel
Strand 3
A
589 592anti-parallel
Strand 4
A
599 602anti-parallel
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