Analysis of interatomic Contacts of Structural Units in PDB entry:
8UJF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UJF entry

There are 2 chains in PDB entry 8UJF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 103	VAL 628
B	LEU 102	ASP 219

There are 42 helices in PDB entry 8UJF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	135	143	Right-handed alpha
Helix 2	AA2	A	147	154	Right-handed alpha
Helix 3	AA3	A	167	171	Right-handed 310
Helix 4	AA4	A	174	178	Right-handed 310
Helix 5	AA5	A	191	205	Right-handed alpha
Helix 6	AA6	A	232	240	Right-handed alpha
Helix 7	AA7	A	255	267	Right-handed alpha
Helix 8	AA8	A	285	296	Right-handed alpha
Helix 9	AA9	A	336	342	Right-handed alpha
Helix 10	AB1	A	343	348	Right-handed 310
Helix 11	AB2	A	370	376	Right-handed alpha
Helix 12	AB3	A	388	400	Right-handed alpha
Helix 13	AB4	A	427	438	Right-handed alpha
Helix 14	AB5	A	439	443	Right-handed 310
Helix 15	AB6	A	444	452	Right-handed alpha
Helix 16	AB7	A	460	475	Right-handed alpha
Helix 17	AB8	A	478	486	Right-handed alpha
Helix 18	AB9	A	494	498	Right-handed 310
Helix 19	AC1	A	533	536	Right-handed 310
Helix 20	AC2	A	593	597	Right-handed 310
Helix 21	AC3	A	607	611	Right-handed 310
Helix 22	AC4	B	135	143	Right-handed alpha
Helix 23	AC5	B	147	154	Right-handed alpha
Helix 24	AC6	B	167	171	Right-handed 310
Helix 25	AC7	B	174	178	Right-handed 310
Helix 26	AC8	B	191	206	Right-handed alpha
Helix 27	AC9	B	232	239	Right-handed alpha
Helix 28	AD1	B	255	267	Right-handed alpha
Helix 29	AD2	B	285	296	Right-handed alpha
Helix 30	AD3	B	336	342	Right-handed alpha
Helix 31	AD4	B	344	348	Right-handed 310
Helix 32	AD5	B	370	376	Right-handed alpha
Helix 33	AD6	B	388	400	Right-handed alpha
Helix 34	AD7	B	427	438	Right-handed alpha
Helix 35	AD8	B	439	443	Right-handed 310
Helix 36	AD9	B	444	452	Right-handed alpha
Helix 37	AE1	B	460	475	Right-handed alpha
Helix 38	AE2	B	478	486	Right-handed alpha
Helix 39	AE3	B	494	498	Right-handed 310
Helix 40	AE4	B	533	536	Right-handed 310
Helix 41	AE5	B	593	597	Right-handed 310
Helix 42	AE6	B	607	610	Right-handed 310

There are 16 sheets in PDB entry 8UJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	249	first strand
Strand 2	A	211	218	parallel
Strand 3	A	181	187	parallel
Strand 4	A	271	275	parallel
Strand 5	A	367	369	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	281	first strand
Strand 2	A	403	415	anti-parallel
Strand 3	A	299	308	parallel
Strand 4	A	315	316	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	281	first strand
Strand 2	A	403	415	anti-parallel
Strand 3	A	356	357	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	327	first strand
Strand 2	A	331	334	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	528	first strand
Strand 2	A	511	514	anti-parallel
Strand 3	A	500	506	anti-parallel
Strand 4	A	538	541	anti-parallel
Strand 5	A	546	549	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	528	first strand
Strand 2	A	511	514	anti-parallel
Strand 3	A	500	506	anti-parallel
Strand 4	A	613	616	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	557	first strand
Strand 2	A	563	565	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	576	first strand
Strand 2	A	582	584	anti-parallel
Strand 3	A	589	592	anti-parallel
Strand 4	A	599	602	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	249	first strand
Strand 2	B	211	218	parallel
Strand 3	B	181	187	parallel
Strand 4	B	271	275	parallel
Strand 5	B	366	369	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	281	first strand
Strand 2	B	403	414	anti-parallel
Strand 3	B	299	308	parallel
Strand 4	B	315	316	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	281	first strand
Strand 2	B	403	414	anti-parallel
Strand 3	B	356	357	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	327	first strand
Strand 2	B	331	334	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	528	first strand
Strand 2	B	511	514	anti-parallel
Strand 3	B	500	506	anti-parallel
Strand 4	B	538	541	anti-parallel
Strand 5	B	546	549	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	528	first strand
Strand 2	B	511	514	anti-parallel
Strand 3	B	500	506	anti-parallel
Strand 4	B	612	616	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	555	557	first strand
Strand 2	B	563	565	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	576	first strand
Strand 2	B	582	584	anti-parallel
Strand 3	B	589	592	anti-parallel
Strand 4	B	599	601	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UJF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UJF