Analysis of interatomic Contacts of Structural Units in PDB entry:
8UJL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UJL entry

There is 1 chain in PDB entry 8UJL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 7ALA 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8UJL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 21Right-handed alpha
Helix 2
AA2
A
75 84Right-handed alpha
Helix 3
AA3
A
96 109Right-handed alpha
Helix 4
AA4
A
119 121Right-handed 310
Helix 5
AA5
A
134 137Right-handed 310
Helix 6
AA6
A
140 142Right-handed 310
Helix 7
AA7
A
150 155Right-handed 310
Helix 8
AA8
A
157 159Right-handed 310
Helix 9
AA9
A
174 179Right-handed alpha
Helix 10
AB1
A
179 187Right-handed alpha
Helix 11
AB2
A
192 197Right-handed alpha
Helix 12
AB3
A
216 238Right-handed alpha
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There are 3 sheets in PDB entry 8UJL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
88 92parallel
Strand 3
A
25 28parallel
Strand 4
A
144 148parallel
Strand 5
A
161 163parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
65 72anti-parallel
Strand 3
A
55 60anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 126first strand
Strand 2
A
129 132anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il