Analysis of interatomic Contacts of Structural Units in PDB entry:
8UJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UJM entry

There are 2 chains in PDB entry 8UJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6MET 256
B
 ASP 6SER 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8UJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 20Right-handed alpha
Helix 2
AA2
A
75 84Right-handed alpha
Helix 3
AA3
A
96 109Right-handed alpha
Helix 4
AA4
A
119 123Right-handed 310
Helix 5
AA5
A
133 137Right-handed 310
Helix 6
AA6
A
150 155Right-handed 310
Helix 7
AA7
A
157 159Right-handed 310
Helix 8
AA8
A
174 179Right-handed alpha
Helix 9
AA9
A
179 187Right-handed alpha
Helix 10
AB1
A
192 197Right-handed alpha
Helix 11
AB2
A
216 235Right-handed alpha
Helix 12
AB3
A
236 239Right-handed 310
Helix 13
AB4
A
240 254Right-handed alpha
Helix 14
AB5
B
11 20Right-handed alpha
Helix 15
AB6
B
75 84Right-handed alpha
Helix 16
AB7
B
96 109Right-handed alpha
Helix 17
AB8
B
119 123Right-handed 310
Helix 18
AB9
B
133 137Right-handed 310
Helix 19
AC1
B
150 155Right-handed 310
Helix 20
AC2
B
157 159Right-handed 310
Helix 21
AC3
B
174 179Right-handed alpha
Helix 22
AC4
B
179 187Right-handed alpha
Helix 23
AC5
B
192 197Right-handed alpha
Helix 24
AC6
B
216 235Right-handed alpha
Helix 25
AC7
B
236 239Right-handed 310
Helix 26
AC8
B
240 254Right-handed alpha
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There are 6 sheets in PDB entry 8UJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
88 92parallel
Strand 3
A
25 28parallel
Strand 4
A
144 148parallel
Strand 5
A
161 163parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
64 72anti-parallel
Strand 3
A
55 61anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
129 131anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
117 118first strand
Strand 2
B
88 92parallel
Strand 3
B
25 28parallel
Strand 4
B
144 148parallel
Strand 5
B
161 163parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 38first strand
Strand 2
B
64 72anti-parallel
Strand 3
B
55 61anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 126first strand
Strand 2
B
129 131anti-parallel
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