Analysis of interatomic Contacts of Structural Units in PDB entry:
8UK9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UK9 entry

There are 5 chains in PDB entry 8UK9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	TRP 187
B	MET 1	LYS 319
C	SER 0	LYS 319
D	ILE 2	LYS 319
E	ILE 2	SER 130

There are200 helices in PDB entry 8UK9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	18	Right-handed alpha
Helix 2	AA2	A	21	31	Right-handed alpha
Helix 3	AA3	A	43	48	Right-handed alpha
Helix 4	AA4	A	61	70	Right-handed alpha
Helix 5	AA5	A	72	74	Right-handed 310
Helix 6	AA6	A	75	85	Right-handed alpha
Helix 7	AA7	A	90	102	Right-handed alpha
Helix 8	AA8	A	117	131	Right-handed alpha
Helix 9	AA9	A	134	146	Right-handed alpha
Helix 10	AB1	A	150	158	Right-handed alpha
Helix 11	AB2	A	163	170	Right-handed alpha
Helix 12	AB3	A	174	179	Right-handed alpha
Helix 13	AB4	B	26	39	Right-handed alpha
Helix 14	AB5	B	55	67	Right-handed alpha
Helix 15	AB6	B	77	79	Right-handed 310
Helix 16	AB7	B	80	85	Right-handed alpha
Helix 17	AB8	B	86	93	Right-handed alpha
Helix 18	AB9	B	114	125	Right-handed alpha
Helix 19	AC1	B	126	131	Right-handed 310
Helix 20	AC2	B	145	152	Right-handed alpha
Helix 21	AC3	B	161	184	Right-handed alpha
Helix 22	AC4	B	189	200	Right-handed alpha
Helix 23	AC5	B	203	214	Right-handed alpha
Helix 24	AC6	B	221	230	Right-handed alpha
Helix 25	AC7	B	235	244	Right-handed alpha
Helix 26	AC8	B	246	258	Right-handed alpha
Helix 27	AC9	B	260	276	Right-handed alpha
Helix 28	AD1	B	277	294	Right-handed alpha
Helix 29	AD2	B	300	316	Right-handed alpha
Helix 30	AD3	C	26	40	Right-handed alpha
Helix 31	AD4	C	55	68	Right-handed alpha
Helix 32	AD5	C	77	79	Right-handed 310
Helix 33	AD6	C	80	86	Right-handed alpha
Helix 34	AD7	C	86	93	Right-handed alpha
Helix 35	AD8	C	114	128	Right-handed alpha
Helix 36	AD9	C	140	144	Right-handed 310
Helix 37	AE1	C	145	152	Right-handed alpha
Helix 38	AE2	C	161	184	Right-handed alpha
Helix 39	AE3	C	189	201	Right-handed alpha
Helix 40	AE4	C	203	215	Right-handed alpha
Helix 41	AE5	C	216	218	Right-handed 310
Helix 42	AE6	C	221	229	Right-handed alpha
Helix 43	AE7	C	236	244	Right-handed alpha
Helix 44	AE8	C	246	254	Right-handed alpha
Helix 45	AE9	C	255	258	Right-handed 310
Helix 46	AF1	C	260	273	Right-handed alpha
Helix 47	AF2	C	277	294	Right-handed alpha
Helix 48	AF3	C	300	314	Right-handed alpha
Helix 49	AF4	D	26	40	Right-handed alpha
Helix 50	AF5	D	55	68	Right-handed alpha
Helix 51	AF6	D	77	79	Right-handed 310
Helix 52	AF7	D	80	86	Right-handed alpha
Helix 53	AF8	D	86	93	Right-handed alpha
Helix 54	AF9	D	114	128	Right-handed alpha
Helix 55	AG1	D	140	144	Right-handed 310
Helix 56	AG2	D	145	152	Right-handed alpha
Helix 57	AG3	D	161	184	Right-handed alpha
Helix 58	AG4	D	190	200	Right-handed alpha
Helix 59	AG5	D	203	215	Right-handed alpha
Helix 60	AG6	D	221	230	Right-handed alpha
Helix 61	AG7	D	235	245	Right-handed alpha
Helix 62	AG8	D	247	252	Right-handed alpha
Helix 63	AG9	D	254	259	Right-handed alpha
Helix 64	AH1	D	260	273	Right-handed alpha
Helix 65	AH2	D	280	294	Right-handed alpha
Helix 66	AH3	D	300	316	Right-handed alpha
Helix 67	AH4	E	10	15	Right-handed alpha
Helix 68	AH5	E	28	39	Right-handed alpha
Helix 69	AH6	E	55	67	Right-handed alpha
Helix 70	AH7	E	80	86	Right-handed alpha
Helix 71	AH8	E	86	94	Right-handed alpha
Helix 72	AH9	E	111	113	Right-handed 310
Helix 73	AI1	E	114	128	Right-handed alpha
Helix 74	AI2	E	140	144	Right-handed 310
Helix 75	AI3	E	145	152	Right-handed alpha
Helix 76	AI4	E	161	184	Right-handed alpha
Helix 77	AI5	E	191	200	Right-handed alpha
Helix 78	AI6	E	203	212	Right-handed alpha
Helix 79	AI7	E	239	244	Right-handed alpha
Helix 80	AI8	E	246	253	Right-handed alpha
Helix 81	AI9	E	254	258	Right-handed 310
Helix 82	AJ1	E	260	271	Right-handed alpha
Helix 83	AJ2	E	272	275	Right-handed 310
Helix 84	AJ3	E	277	294	Right-handed alpha
Helix 85	AJ4	E	300	314	Right-handed alpha
Helix 86	AJ5	F	4	16	Right-handed alpha
Helix 87	AJ6	F	56	65	Right-handed alpha
Helix 88	AJ7	F	96	100	Right-handed 310
Helix 89	AJ8	F	122	133	Right-handed alpha
Helix 90	AJ9	F	154	158	Right-handed 310
Helix 91	AK1	F	183	187	Right-handed 310
Helix 92	AK2	G	4	18	Right-handed alpha
Helix 93	AK3	G	56	65	Right-handed alpha
Helix 94	AK4	G	96	100	Right-handed 310
Helix 95	AK5	G	119	134	Right-handed alpha
Helix 96	AK6	G	153	158	Right-handed alpha
Helix 97	AK7	G	185	187	Right-handed 310
Helix 98	AK8	H	4	18	Right-handed alpha
Helix 99	AK9	H	56	65	Right-handed alpha
Helix 100	AL1	H	119	134	Right-handed alpha
Helix 101	AL2	K	10	15	Right-handed alpha
Helix 102	AL3	K	26	39	Right-handed alpha
Helix 103	AL4	K	55	68	Right-handed alpha
Helix 104	AL5	K	77	79	Right-handed 310
Helix 105	AL6	K	80	86	Right-handed alpha
Helix 106	AL7	K	86	93	Right-handed alpha
Helix 107	AL8	K	114	128	Right-handed alpha
Helix 108	AL9	K	145	152	Right-handed alpha
Helix 109	AM1	K	161	184	Right-handed alpha
Helix 110	AM2	K	189	200	Right-handed alpha
Helix 111	AM3	K	203	214	Right-handed alpha
Helix 112	AM4	K	221	230	Right-handed alpha
Helix 113	AM5	K	235	243	Right-handed alpha
Helix 114	AM6	K	246	257	Right-handed alpha
Helix 115	AM7	K	260	272	Right-handed alpha
Helix 116	AM8	K	273	276	Right-handed 310
Helix 117	AM9	K	279	293	Right-handed alpha
Helix 118	AN1	K	300	316	Right-handed alpha
Helix 119	AN2	L	26	39	Right-handed alpha
Helix 120	AN3	L	55	68	Right-handed alpha
Helix 121	AN4	L	77	79	Right-handed 310
Helix 122	AN5	L	80	86	Right-handed alpha
Helix 123	AN6	L	86	94	Right-handed alpha
Helix 124	AN7	L	114	122	Right-handed alpha
Helix 125	AN8	L	123	128	Right-handed alpha
Helix 126	AN9	L	140	144	Right-handed 310
Helix 127	AO1	L	145	152	Right-handed alpha
Helix 128	AO2	L	161	184	Right-handed alpha
Helix 129	AO3	L	190	200	Right-handed alpha
Helix 130	AO4	L	203	215	Right-handed alpha
Helix 131	AO5	L	221	229	Right-handed alpha
Helix 132	AO6	L	235	245	Right-handed alpha
Helix 133	AO7	L	246	253	Right-handed alpha
Helix 134	AO8	L	260	276	Right-handed alpha
Helix 135	AO9	L	277	279	Right-handed 310
Helix 136	AP1	L	280	294	Right-handed alpha
Helix 137	AP2	L	300	315	Right-handed alpha
Helix 138	AP3	M	26	39	Right-handed alpha
Helix 139	AP4	M	55	68	Right-handed alpha
Helix 140	AP5	M	80	86	Right-handed alpha
Helix 141	AP6	M	86	93	Right-handed alpha
Helix 142	AP7	M	111	113	Right-handed 310
Helix 143	AP8	M	114	128	Right-handed alpha
Helix 144	AP9	M	140	144	Right-handed 310
Helix 145	AQ1	M	145	152	Right-handed alpha
Helix 146	AQ2	M	161	184	Right-handed alpha
Helix 147	AQ3	M	190	200	Right-handed alpha
Helix 148	AQ4	M	203	215	Right-handed alpha
Helix 149	AQ5	M	221	226	Right-handed alpha
Helix 150	AQ6	M	236	244	Right-handed alpha
Helix 151	AQ7	M	246	252	Right-handed alpha
Helix 152	AQ8	M	253	258	Right-handed 310
Helix 153	AQ9	M	260	273	Right-handed alpha
Helix 154	AR1	M	277	294	Right-handed alpha
Helix 155	AR2	M	301	315	Right-handed alpha
Helix 156	AR3	N	10	15	Right-handed alpha
Helix 157	AR4	N	26	39	Right-handed alpha
Helix 158	AR5	N	55	67	Right-handed alpha
Helix 159	AR6	N	77	79	Right-handed 310
Helix 160	AR7	N	80	86	Right-handed alpha
Helix 161	AR8	N	86	94	Right-handed alpha
Helix 162	AR9	N	114	128	Right-handed alpha
Helix 163	AS1	N	140	144	Right-handed 310
Helix 164	AS2	N	145	151	Right-handed alpha
Helix 165	AS3	N	161	184	Right-handed alpha
Helix 166	AS4	N	193	200	Right-handed alpha
Helix 167	AS5	N	203	215	Right-handed alpha
Helix 168	AS6	N	235	243	Right-handed alpha
Helix 169	AS7	N	246	252	Right-handed alpha
Helix 170	AS8	N	254	259	Right-handed alpha
Helix 171	AS9	N	260	272	Right-handed alpha
Helix 172	AT1	N	277	294	Right-handed alpha
Helix 173	AT2	N	300	315	Right-handed alpha
Helix 174	AT3	Q	11	19	Right-handed alpha
Helix 175	AT4	Q	21	31	Right-handed alpha
Helix 176	AT5	Q	40	45	Right-handed alpha
Helix 177	AT6	Q	62	69	Right-handed alpha
Helix 178	AT7	Q	75	85	Right-handed alpha
Helix 179	AT8	Q	91	101	Right-handed alpha
Helix 180	AT9	Q	117	131	Right-handed alpha
Helix 181	AU1	Q	134	140	Right-handed alpha
Helix 182	AU2	Q	142	147	Right-handed alpha
Helix 183	AU3	Q	150	158	Right-handed alpha
Helix 184	AU4	Q	159	162	Right-handed 310
Helix 185	AU5	Q	165	169	Right-handed 310
Helix 186	AU6	R	4	14	Right-handed alpha
Helix 187	AU7	R	56	65	Right-handed alpha
Helix 188	AU8	R	96	100	Right-handed 310
Helix 189	AU9	R	119	134	Right-handed alpha
Helix 190	AV1	R	153	158	Right-handed alpha
Helix 191	AV2	R	185	187	Right-handed 310
Helix 192	AV3	S	4	16	Right-handed alpha
Helix 193	AV4	S	56	64	Right-handed alpha
Helix 194	AV5	S	65	67	Right-handed 310
Helix 195	AV6	S	119	133	Right-handed alpha
Helix 196	AV7	S	185	187	Right-handed 310
Helix 197	AV8	T	4	16	Right-handed alpha
Helix 198	AV9	T	56	65	Right-handed alpha
Helix 199	AW1	T	96	100	Right-handed 310
Helix 200	AW2	T	119	134	Right-handed alpha

There are 32 sheets in PDB entry 8UK9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	75	first strand
Strand 2	B	102	107	parallel
Strand 3	B	133	138	parallel
Strand 4	B	45	48	parallel
Strand 5	B	153	156	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	75	first strand
Strand 2	C	102	107	parallel
Strand 3	C	132	138	parallel
Strand 4	C	45	48	parallel
Strand 5	C	153	156	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	75	first strand
Strand 2	D	102	107	parallel
Strand 3	D	132	138	parallel
Strand 4	D	45	48	parallel
Strand 5	D	153	156	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	187	first strand
Strand 2	D	219	220	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	75	first strand
Strand 2	E	102	107	parallel
Strand 3	E	132	138	parallel
Strand 4	E	45	48	parallel
Strand 5	E	153	156	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	32	first strand
Strand 2	F	39	48	anti-parallel
Strand 3	F	214	217	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	75	first strand
Strand 2	F	81	84	anti-parallel
Strand 3	F	89	92	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	117	first strand
Strand 2	F	195	198	anti-parallel
Strand 3	F	207	210	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	171	first strand
Strand 2	F	146	149	anti-parallel
Strand 3	F	140	143	anti-parallel
Strand 4	F	179	180	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	23	first strand
Strand 2	G	52	54	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	32	first strand
Strand 2	G	38	48	anti-parallel
Strand 3	G	214	219	anti-parallel
Strand 4	G	206	210	anti-parallel
Strand 5	G	194	199	anti-parallel
Strand 6	G	114	118	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	75	first strand
Strand 2	G	81	84	anti-parallel
Strand 3	G	88	92	anti-parallel
Strand 4	H	165	171	anti-parallel
Strand 5	H	146	151	anti-parallel
Strand 6	H	137	143	anti-parallel
Strand 7	H	178	183	anti-parallel
Strand 8	H	225	226	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	171	first strand
Strand 2	G	146	152	anti-parallel
Strand 3	G	137	143	anti-parallel
Strand 4	G	179	183	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	21	23	first strand
Strand 2	H	52	54	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	32	first strand
Strand 2	H	38	48	anti-parallel
Strand 3	H	214	219	anti-parallel
Strand 4	H	204	211	anti-parallel
Strand 5	H	194	201	anti-parallel
Strand 6	H	114	118	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	72	75	first strand
Strand 2	H	81	84	anti-parallel
Strand 3	H	89	92	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	71	75	first strand
Strand 2	K	103	107	parallel
Strand 3	K	133	138	parallel
Strand 4	K	45	48	parallel
Strand 5	K	153	156	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	70	75	first strand
Strand 2	L	102	107	parallel
Strand 3	L	132	138	parallel
Strand 4	L	45	48	parallel
Strand 5	L	153	156	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	70	75	first strand
Strand 2	M	102	107	parallel
Strand 3	M	132	138	parallel
Strand 4	M	45	48	parallel
Strand 5	M	153	156	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	70	75	first strand
Strand 2	N	102	107	parallel
Strand 3	N	132	138	parallel
Strand 4	N	45	48	parallel
Strand 5	N	153	155	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	21	23	first strand
Strand 2	R	52	54	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	28	32	first strand
Strand 2	R	38	43	anti-parallel
Strand 3	R	214	218	anti-parallel
Strand 4	R	204	210	anti-parallel
Strand 5	R	194	201	anti-parallel
Strand 6	R	114	118	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	81	84	first strand
Strand 2	R	88	92	anti-parallel
Strand 3	S	165	171	anti-parallel
Strand 4	S	146	152	anti-parallel
Strand 5	S	137	143	anti-parallel
Strand 6	S	178	183	anti-parallel
Strand 7	S	225	226	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	170	171	first strand
Strand 2	R	146	152	anti-parallel
Strand 3	R	137	143	anti-parallel
Strand 4	R	178	183	anti-parallel
Strand 5	R	225	226	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	170	171	first strand
Strand 2	R	146	152	anti-parallel
Strand 3	R	165	167	anti-parallel
Strand 4	T	88	92	anti-parallel
Strand 5	T	81	84	anti-parallel
Strand 6	T	73	75	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	21	23	first strand
Strand 2	S	52	54	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	26	32	first strand
Strand 2	S	38	48	anti-parallel
Strand 3	S	214	219	anti-parallel
Strand 4	S	204	210	anti-parallel
Strand 5	S	194	201	anti-parallel
Strand 6	S	114	118	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	73	75	first strand
Strand 2	S	81	83	anti-parallel
Strand 3	S	90	92	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	21	23	first strand
Strand 2	T	52	54	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	26	32	first strand
Strand 2	T	38	48	anti-parallel
Strand 3	T	214	218	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	114	118	first strand
Strand 2	T	194	199	anti-parallel
Strand 3	T	206	208	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	150	152	first strand
Strand 2	T	137	141	anti-parallel
Strand 3	T	179	182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UK9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UK9