Analysis of interatomic Contacts of Structural Units in PDB entry:
8UKA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UKA entry

There are 10 chains in PDB entry 8UKA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 36LYS 96
B
 GLY 36LYS 96
C
 GLY 36LYS 96
D
 GLY 36LYS 96
E
 GLY 36LYS 96
a
 GLY 36LYS 96
b
 GLY 36LYS 96
c
 GLY 36LYS 96
d
 GLY 36LYS 96
e
 GLY 36LYS 96
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8UKA

There are 14 sheets in PDB entry 8UKA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 40first strand
Strand 2
C
38 40parallel
Strand 3
A
38 40parallel
Strand 4
D
38 40parallel
Strand 5
E
38 40parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 46first strand
Strand 2
C
45 46parallel
Strand 3
A
45 46parallel
Strand 4
D
45 46parallel
Strand 5
E
45 46parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 57first strand
Strand 2
C
52 57parallel
Strand 3
A
52 57parallel
Strand 4
D
52 57parallel
Strand 5
E
52 57parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
C
60 63parallel
Strand 3
A
60 63parallel
Strand 4
D
60 61parallel
Strand 5
E
60 61parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
C
70 71parallel
Strand 3
A
70 71parallel
Strand 4
D
70 71parallel
Strand 5
E
70 71parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
C
81 82parallel
Strand 3
A
81 82parallel
Strand 4
D
81 82parallel
Strand 5
E
81 82parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 89first strand
Strand 2
C
87 89parallel
Strand 3
A
87 88parallel
Strand 4
D
87 88parallel
Strand 5
E
87 88parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
38 40first strand
Strand 2
c
38 40parallel
Strand 3
a
38 40parallel
Strand 4
d
38 40parallel
Strand 5
e
38 40parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
45 46first strand
Strand 2
c
45 46parallel
Strand 3
a
45 46parallel
Strand 4
d
45 46parallel
Strand 5
e
45 46parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
52 57first strand
Strand 2
c
52 57parallel
Strand 3
a
52 57parallel
Strand 4
d
52 57parallel
Strand 5
e
52 57parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
60 63first strand
Strand 2
c
60 63parallel
Strand 3
a
60 63parallel
Strand 4
d
60 61parallel
Strand 5
e
60 61parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
70 71first strand
Strand 2
c
70 71parallel
Strand 3
a
70 71parallel
Strand 4
d
70 71parallel
Strand 5
e
70 71parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
81 82first strand
Strand 2
c
81 82parallel
Strand 3
a
81 82parallel
Strand 4
d
81 82parallel
Strand 5
e
81 82parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
b
87 88first strand
Strand 2
c
87 88parallel
Strand 3
a
87 88parallel
Strand 4
d
87 88parallel
Strand 5
e
87 88parallel
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