Analysis of interatomic Contacts of Structural Units in PDB entry:
8UKH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UKH entry

There are 6 chains in PDB entry 8UKH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 60	SER 116
B	SER 60	PRO 115
C	GLN 59	SER 116
D	GLN 59	SER 116
H	GLN 1	ARG 217
I	GLN 1	PRO 216

There are 43 helices in PDB entry 8UKH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	62	83	Right-handed alpha
Helix 2	AA2	A	90	110	Right-handed alpha
Helix 3	AA3	A	111	113	Right-handed 310
Helix 4	AA4	B	61	83	Right-handed alpha
Helix 5	AA5	B	90	112	Right-handed alpha
Helix 6	AA6	C	60	84	Right-handed alpha
Helix 7	AA7	C	90	110	Right-handed alpha
Helix 8	AA8	C	111	113	Right-handed 310
Helix 9	AA9	D	59	62	Right-handed 310
Helix 10	AB1	D	63	84	Right-handed alpha
Helix 11	AB2	D	90	111	Right-handed alpha
Helix 12	AB3	H	28	32	Right-handed 310
Helix 13	AB4	H	74	76	Right-handed 310
Helix 14	AB5	H	87	91	Right-handed 310
Helix 15	AB6	H	158	162	Right-handed 310
Helix 16	AB7	I	28	32	Right-handed 310
Helix 17	AB8	I	62	65	Right-handed 310
Helix 18	AB9	I	74	76	Right-handed 310
Helix 19	AC1	I	87	91	Right-handed 310
Helix 20	AC2	I	160	162	Right-handed 310
Helix 21	AC3	I	190	192	Right-handed 310
Helix 22	AC4	J	28	32	Right-handed 310
Helix 23	AC5	J	62	65	Right-handed 310
Helix 24	AC6	J	87	91	Right-handed 310
Helix 25	AC7	J	160	162	Right-handed 310
Helix 26	AC8	J	190	192	Right-handed 310
Helix 27	AC9	K	28	32	Right-handed 310
Helix 28	AD1	K	62	65	Right-handed 310
Helix 29	AD2	K	160	162	Right-handed 310
Helix 30	AD3	K	190	192	Right-handed 310
Helix 31	AD4	K	204	207	Right-handed 310
Helix 32	AD5	L	79	83	Right-handed 310
Helix 33	AD6	L	122	127	Right-handed alpha
Helix 34	AD7	L	182	187	Right-handed alpha
Helix 35	AD8	M	79	83	Right-handed 310
Helix 36	AD9	M	120	126	Right-handed alpha
Helix 37	AE1	M	182	186	Right-handed alpha
Helix 38	AE2	N	79	83	Right-handed 310
Helix 39	AE3	N	120	126	Right-handed alpha
Helix 40	AE4	N	182	186	Right-handed alpha
Helix 41	AE5	O	79	83	Right-handed 310
Helix 42	AE6	O	120	126	Right-handed alpha
Helix 43	AE7	O	182	186	Right-handed alpha

There are 44 sheets in PDB entry 8UKH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	111	115	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	111	115	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	106	107	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	178	188	anti-parallel
Strand 4	H	167	169	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	178	188	anti-parallel
Strand 4	H	173	175	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	198	203	first strand
Strand 2	H	208	213	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	111	115	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	45	52	anti-parallel
Strand 6	I	57	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	111	115	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	104	107	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	124	128	first strand
Strand 2	I	139	147	anti-parallel
Strand 3	I	183	188	anti-parallel
Strand 4	I	167	169	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	155	158	first strand
Strand 2	I	198	203	anti-parallel
Strand 3	I	208	213	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	173	175	first strand
Strand 2	I	178	180	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	17	25	anti-parallel
Strand 3	J	78	84	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	111	115	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	33	39	anti-parallel
Strand 5	J	45	51	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	111	115	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	104	107	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	124	128	first strand
Strand 2	J	139	149	anti-parallel
Strand 3	J	178	188	anti-parallel
Strand 4	J	167	169	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	124	128	first strand
Strand 2	J	139	149	anti-parallel
Strand 3	J	178	188	anti-parallel
Strand 4	J	173	175	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	155	158	first strand
Strand 2	J	198	203	anti-parallel
Strand 3	J	208	213	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	112	115	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	46	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	112	115	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	104	107	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	124	128	first strand
Strand 2	K	139	149	anti-parallel
Strand 3	K	178	188	anti-parallel
Strand 4	K	168	169	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	124	128	first strand
Strand 2	K	139	149	anti-parallel
Strand 3	K	178	188	anti-parallel
Strand 4	K	173	175	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	155	158	first strand
Strand 2	K	198	203	anti-parallel
Strand 3	K	208	213	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	96	97	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	113	117	first strand
Strand 2	L	128	138	anti-parallel
Strand 3	L	172	181	anti-parallel
Strand 4	L	158	162	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	152	154	first strand
Strand 2	L	144	149	anti-parallel
Strand 3	L	190	197	anti-parallel
Strand 4	L	200	209	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	5	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	67	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	101	105	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	45	49	anti-parallel
Strand 6	M	53	54	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	101	105	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	96	97	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	113	117	first strand
Strand 2	M	128	138	anti-parallel
Strand 3	M	172	181	anti-parallel
Strand 4	M	158	162	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	152	154	first strand
Strand 2	M	144	149	anti-parallel
Strand 3	M	191	197	anti-parallel
Strand 4	M	200	208	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	5	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	62	67	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	101	105	parallel
Strand 3	N	85	90	anti-parallel
Strand 4	N	33	38	anti-parallel
Strand 5	N	44	49	anti-parallel
Strand 6	N	53	54	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	101	105	parallel
Strand 3	N	85	90	anti-parallel
Strand 4	N	96	97	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	113	117	first strand
Strand 2	N	128	138	anti-parallel
Strand 3	N	172	181	anti-parallel
Strand 4	N	158	162	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	152	154	first strand
Strand 2	N	143	149	anti-parallel
Strand 3	N	190	197	anti-parallel
Strand 4	N	204	209	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	4	5	first strand
Strand 2	O	19	25	anti-parallel
Strand 3	O	70	75	anti-parallel
Strand 4	O	62	67	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	13	first strand
Strand 2	O	101	105	parallel
Strand 3	O	85	90	anti-parallel
Strand 4	O	33	38	anti-parallel
Strand 5	O	44	49	anti-parallel
Strand 6	O	53	54	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	13	first strand
Strand 2	O	101	105	parallel
Strand 3	O	85	90	anti-parallel
Strand 4	O	96	97	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	113	117	first strand
Strand 2	O	128	138	anti-parallel
Strand 3	O	172	181	anti-parallel
Strand 4	O	158	162	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	152	154	first strand
Strand 2	O	144	149	anti-parallel
Strand 3	O	191	197	anti-parallel
Strand 4	O	200	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UKH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UKH