Analysis of interatomic Contacts of Structural Units in PDB entry:
8UKN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UKN entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 15 chains in PDB entry 8UKN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ALA 14	PHE 138
C	GLU 140	TRP 196
C	LEU 198	VAL 337
C	ILE 339	PHE 350
D	ALA 14	PHE 138
D	GLU 140	TRP 196
D	LEU 198	VAL 337
D	ILE 339	PHE 350
F	ASN 13	PHE 138
F	GLU 140	TRP 196
F	LEU 198	VAL 337
F	ILE 339	PHE 350
H	ALA 14	PHE 138
H	GLU 140	TRP 196
H	LEU 198	LEU 268

There are 61 helices in PDB entry 8UKN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	14	32	Right-handed alpha
Helix 2	AA2	C	39	41	Right-handed 310
Helix 3	AA3	C	76	82	Right-handed alpha
Helix 4	AA4	C	84	96	Right-handed alpha
Helix 5	AA5	C	127	136	Right-handed alpha
Helix 6	AA6	C	139	160	Right-handed alpha
Helix 7	AA7	C	168	170	Right-handed 310
Helix 8	AA8	C	201	205	Right-handed 310
Helix 9	AA9	C	206	211	Right-handed alpha
Helix 10	AB1	C	217	234	Right-handed alpha
Helix 11	AB2	C	242	253	Right-handed alpha
Helix 12	AB3	C	262	273	Right-handed alpha
Helix 13	AB4	C	288	293	Right-handed alpha
Helix 14	AB5	C	294	298	Right-handed 310
Helix 15	AB6	C	301	307	Right-handed alpha
Helix 16	AB7	D	15	32	Right-handed alpha
Helix 17	AB8	D	39	41	Right-handed 310
Helix 18	AB9	D	76	82	Right-handed alpha
Helix 19	AC1	D	84	96	Right-handed alpha
Helix 20	AC2	D	127	136	Right-handed alpha
Helix 21	AC3	D	139	160	Right-handed alpha
Helix 22	AC4	D	168	170	Right-handed 310
Helix 23	AC5	D	201	205	Right-handed 310
Helix 24	AC6	D	206	211	Right-handed alpha
Helix 25	AC7	D	217	234	Right-handed alpha
Helix 26	AC8	D	242	253	Right-handed alpha
Helix 27	AC9	D	262	273	Right-handed alpha
Helix 28	AD1	D	288	293	Right-handed alpha
Helix 29	AD2	D	294	298	Right-handed 310
Helix 30	AD3	D	301	307	Right-handed alpha
Helix 31	AD4	F	14	32	Right-handed alpha
Helix 32	AD5	F	39	41	Right-handed 310
Helix 33	AD6	F	76	82	Right-handed alpha
Helix 34	AD7	F	84	96	Right-handed alpha
Helix 35	AD8	F	127	136	Right-handed alpha
Helix 36	AD9	F	139	160	Right-handed alpha
Helix 37	AE1	F	168	170	Right-handed 310
Helix 38	AE2	F	201	205	Right-handed 310
Helix 39	AE3	F	206	211	Right-handed alpha
Helix 40	AE4	F	217	234	Right-handed alpha
Helix 41	AE5	F	242	253	Right-handed alpha
Helix 42	AE6	F	262	273	Right-handed alpha
Helix 43	AE7	F	276	280	Right-handed 310
Helix 44	AE8	F	288	293	Right-handed alpha
Helix 45	AE9	F	294	298	Right-handed 310
Helix 46	AF1	F	301	307	Right-handed alpha
Helix 47	AF2	H	15	32	Right-handed alpha
Helix 48	AF3	H	39	41	Right-handed 310
Helix 49	AF4	H	76	82	Right-handed alpha
Helix 50	AF5	H	84	96	Right-handed alpha
Helix 51	AF6	H	127	136	Right-handed alpha
Helix 52	AF7	H	139	160	Right-handed alpha
Helix 53	AF8	H	168	170	Right-handed 310
Helix 54	AF9	H	201	205	Right-handed 310
Helix 55	AG1	H	206	211	Right-handed alpha
Helix 56	AG2	H	217	234	Right-handed alpha
Helix 57	AG3	H	242	253	Right-handed alpha
Helix 58	AG4	H	262	273	Right-handed alpha
Helix 59	AG5	H	288	293	Right-handed alpha
Helix 60	AG6	H	294	298	Right-handed 310
Helix 61	AG7	H	301	307	Right-handed alpha

There are 12 sheets in PDB entry 8UKN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	51	first strand
Strand 2	C	56	62	anti-parallel
Strand 3	C	68	75	anti-parallel
Strand 4	C	115	121	anti-parallel
Strand 5	C	106	111	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	163	first strand
Strand 2	C	189	190	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	174	first strand
Strand 2	C	180	182	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	51	first strand
Strand 2	D	55	62	anti-parallel
Strand 3	D	68	75	anti-parallel
Strand 4	D	115	121	anti-parallel
Strand 5	D	106	111	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	163	first strand
Strand 2	D	189	190	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	174	first strand
Strand 2	D	180	182	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	51	first strand
Strand 2	F	55	62	anti-parallel
Strand 3	F	68	75	anti-parallel
Strand 4	F	115	121	anti-parallel
Strand 5	F	106	111	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	163	first strand
Strand 2	F	189	190	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	172	174	first strand
Strand 2	F	180	182	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	51	first strand
Strand 2	H	56	62	anti-parallel
Strand 3	H	68	75	anti-parallel
Strand 4	H	115	121	anti-parallel
Strand 5	H	106	111	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	163	first strand
Strand 2	H	189	190	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	172	174	first strand
Strand 2	H	180	182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UKN

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UKN