Analysis of interatomic Contacts of Structural Units in PDB entry:
8UKW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UKW entry

There are 2 chains in PDB entry 8UKW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 305	PRO 613
B	LYS 304	PRO 613

There are 23 helices in PDB entry 8UKW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	318	322	Right-handed 310
Helix 2	AA2	A	331	336	Right-handed 310
Helix 3	AA3	A	348	354	Right-handed alpha
Helix 4	AA4	A	364	374	Right-handed 310
Helix 5	AA5	A	393	397	Right-handed 310
Helix 6	AA6	A	407	410	Right-handed 310
Helix 7	AA7	A	447	451	Right-handed 310
Helix 8	AA8	A	452	456	Right-handed 310
Helix 9	AA9	A	471	478	Right-handed alpha
Helix 10	AB1	A	495	499	Right-handed 310
Helix 11	AB2	A	608	612	Right-handed 310
Helix 12	AB3	B	318	322	Right-handed 310
Helix 13	AB4	B	331	336	Right-handed 310
Helix 14	AB5	B	348	354	Right-handed alpha
Helix 15	AB6	B	355	359	Right-handed 310
Helix 16	AB7	B	364	374	Right-handed 310
Helix 17	AB8	B	393	397	Right-handed 310
Helix 18	AB9	B	407	410	Right-handed 310
Helix 19	AC1	B	447	451	Right-handed 310
Helix 20	AC2	B	452	456	Right-handed 310
Helix 21	AC3	B	471	478	Right-handed alpha
Helix 22	AC4	B	495	499	Right-handed 310
Helix 23	AC5	B	608	612	Right-handed 310

There are 12 sheets in PDB entry 8UKW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	314	first strand
Strand 2	A	340	342	parallel
Strand 3	A	376	377	parallel
Strand 4	A	401	402	parallel
Strand 5	A	431	432	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	347	first strand
Strand 2	A	381	383	parallel
Strand 3	A	412	417	parallel
Strand 4	A	436	440	parallel
Strand 5	A	464	467	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	505	507	first strand
Strand 2	A	510	512	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	527	first strand
Strand 2	A	530	533	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	563	first strand
Strand 2	A	566	568	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	576	first strand
Strand 2	A	582	587	anti-parallel
Strand 3	A	593	595	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	314	first strand
Strand 2	B	340	342	parallel
Strand 3	B	376	377	parallel
Strand 4	B	401	402	parallel
Strand 5	B	431	432	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	347	first strand
Strand 2	B	381	383	parallel
Strand 3	B	412	417	parallel
Strand 4	B	436	440	parallel
Strand 5	B	464	467	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	507	first strand
Strand 2	B	510	512	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	527	first strand
Strand 2	B	530	533	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	561	563	first strand
Strand 2	B	566	568	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	576	first strand
Strand 2	B	582	587	anti-parallel
Strand 3	B	593	595	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UKW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UKW