Analysis of interatomic Contacts of Structural Units in PDB entry:
8UKY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UKY entry

There are 6 chains in PDB entry 8UKY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	ASP 1	GLU 212
H	GLU 1	LYS 219
C	SER 21	LEU 183
A	ASP 1	CYS 213
B	GLU 1	LYS 219
D	SER 21	LEU 183

There are 33 helices in PDB entry 8UKY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	79	83	Right-handed 310
Helix 2	AA2	L	120	127	Right-handed alpha
Helix 3	AA3	L	182	187	Right-handed alpha
Helix 4	AA4	H	28	32	Right-handed 310
Helix 5	AA5	H	62	65	Right-handed 310
Helix 6	AA6	H	87	91	Right-handed 310
Helix 7	AA7	H	161	163	Right-handed 310
Helix 8	AA8	H	192	196	Right-handed 310
Helix 9	AA9	H	206	209	Right-handed 310
Helix 10	AB1	C	23	51	Right-handed alpha
Helix 11	AB2	C	69	81	Right-handed alpha
Helix 12	AB3	C	83	100	Right-handed alpha
Helix 13	AB4	C	106	119	Right-handed alpha
Helix 14	AB5	C	124	145	Right-handed alpha
Helix 15	AB6	C	150	165	Right-handed alpha
Helix 16	AB7	C	166	174	Right-handed alpha
Helix 17	AB8	C	175	181	Right-handed 310
Helix 18	AB9	A	79	83	Right-handed 310
Helix 19	AC1	A	120	127	Right-handed alpha
Helix 20	AC2	A	182	187	Right-handed alpha
Helix 21	AC3	B	28	32	Right-handed 310
Helix 22	AC4	B	62	65	Right-handed 310
Helix 23	AC5	B	87	91	Right-handed 310
Helix 24	AC6	B	161	163	Right-handed 310
Helix 25	AC7	B	206	209	Right-handed 310
Helix 26	AC8	D	23	50	Right-handed alpha
Helix 27	AC9	D	69	81	Right-handed alpha
Helix 28	AD1	D	83	100	Right-handed alpha
Helix 29	AD2	D	106	119	Right-handed alpha
Helix 30	AD3	D	124	145	Right-handed alpha
Helix 31	AD4	D	150	165	Right-handed alpha
Helix 32	AD5	D	166	174	Right-handed alpha
Helix 33	AD6	D	176	181	Right-handed 310

There are 22 sheets in PDB entry 8UKY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	96	97	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	113	117	first strand
Strand 2	L	128	138	anti-parallel
Strand 3	L	172	181	anti-parallel
Strand 4	L	158	162	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	152	153	first strand
Strand 2	L	144	149	anti-parallel
Strand 3	L	190	196	anti-parallel
Strand 4	L	204	209	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	105	108	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	140	150	anti-parallel
Strand 3	H	181	190	anti-parallel
Strand 4	H	168	170	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	140	150	anti-parallel
Strand 3	H	181	190	anti-parallel
Strand 4	H	174	175	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	200	205	anti-parallel
Strand 3	H	210	215	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	62	67	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	101	105	parallel
Strand 3	A	85	90	anti-parallel
Strand 4	A	33	38	anti-parallel
Strand 5	A	45	49	anti-parallel
Strand 6	A	53	54	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	101	105	parallel
Strand 3	A	85	90	anti-parallel
Strand 4	A	96	97	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	117	first strand
Strand 2	A	128	138	anti-parallel
Strand 3	A	172	181	anti-parallel
Strand 4	A	158	162	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	144	149	anti-parallel
Strand 3	A	190	196	anti-parallel
Strand 4	A	204	209	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	112	116	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	52	anti-parallel
Strand 6	B	57	60	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	112	116	parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	105	108	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	140	150	anti-parallel
Strand 3	B	181	190	anti-parallel
Strand 4	B	168	170	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	140	150	anti-parallel
Strand 3	B	181	190	anti-parallel
Strand 4	B	174	175	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	159	first strand
Strand 2	B	200	205	anti-parallel
Strand 3	B	210	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UKY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UKY