Analysis of interatomic Contacts of Structural Units in PDB entry:
8UL9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UL9 entry

There are 2 chains in PDB entry 8UL9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2LYS 388
B
 GLY 2LYS 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8UL9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
30 42Right-handed alpha
Helix 3
AA3
A
47 70Right-handed alpha
Helix 4
AA4
A
79 106Right-handed alpha
Helix 5
AA5
A
110 128Right-handed alpha
Helix 6
AA6
A
128 137Right-handed alpha
Helix 7
AA7
A
141 165Right-handed alpha
Helix 8
AA8
A
177 193Right-handed alpha
Helix 9
AA9
A
194 200Right-handed alpha
Helix 10
AB1
A
217 248Right-handed alpha
Helix 11
AB2
A
255 266Right-handed alpha
Helix 12
AB3
A
268 285Right-handed alpha
Helix 13
AB4
A
286 289Right-handed 310
Helix 14
AB5
A
290 314Right-handed alpha
Helix 15
AB6
A
322 341Right-handed alpha
Helix 16
AB7
A
347 381Right-handed alpha
Helix 17
AB8
B
7 14Right-handed 310
Helix 18
AB9
B
24 31Right-handed alpha
Helix 19
AC1
B
31 39Right-handed alpha
Helix 20
AC2
B
47 70Right-handed alpha
Helix 21
AC3
B
78 106Right-handed alpha
Helix 22
AC4
B
110 128Right-handed alpha
Helix 23
AC5
B
128 137Right-handed alpha
Helix 24
AC6
B
141 166Right-handed alpha
Helix 25
AC7
B
177 193Right-handed alpha
Helix 26
AC8
B
194 199Right-handed alpha
Helix 27
AC9
B
217 248Right-handed alpha
Helix 28
AD1
B
253 285Right-handed alpha
Helix 29
AD2
B
286 289Right-handed 310
Helix 30
AD3
B
290 315Right-handed alpha
Helix 31
AD4
B
322 341Right-handed alpha
Helix 32
AD5
B
345 381Right-handed alpha
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There are 3 sheets in PDB entry 8UL9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
215 216anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 22first strand
Strand 2
B
168 170parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 204first strand
Strand 2
B
215 216anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il