Analysis of interatomic Contacts of Structural Units in PDB entry:
8ULJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ULJ entry

There are 4 chains in PDB entry 8ULJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 27	ASN 104
L	GLU 2	GLU 214
H	GLN 1	PRO 221
B	PHE 137	LEU 544

There are 26 helices in PDB entry 8ULJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	98	Right-handed alpha
Helix 2	AA2	L	29	32	Right-handed 310
Helix 3	AA3	L	80	84	Right-handed 310
Helix 4	AA4	L	122	128	Right-handed alpha
Helix 5	AA5	L	183	188	Right-handed alpha
Helix 6	AA6	H	28	32	Right-handed 310
Helix 7	AA7	H	53	56	Right-handed 310
Helix 8	AA8	H	62	65	Right-handed 310
Helix 9	AA9	H	87	91	Right-handed 310
Helix 10	AB1	H	195	199	Right-handed 310
Helix 11	AB2	B	137	142	Right-handed 310
Helix 12	AB3	B	148	159	Right-handed alpha
Helix 13	AB4	B	162	171	Right-handed alpha
Helix 14	AB5	B	195	201	Right-handed alpha
Helix 15	AB6	B	216	240	Right-handed alpha
Helix 16	AB7	B	253	264	Right-handed alpha
Helix 17	AB8	B	267	277	Right-handed alpha
Helix 18	AB9	B	277	284	Right-handed alpha
Helix 19	AC1	B	354	358	Right-handed 310
Helix 20	AC2	B	370	372	Right-handed 310
Helix 21	AC3	B	376	379	Right-handed 310
Helix 22	AC4	B	380	385	Right-handed alpha
Helix 23	AC5	B	473	478	Right-handed 310
Helix 24	AC6	B	479	483	Right-handed 310
Helix 25	AC7	B	492	517	Right-handed alpha
Helix 26	AC8	B	541	544	Right-handed 310

There are 18 sheets in PDB entry 8ULJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	364	368	anti-parallel
Strand 3	A	38	49	parallel
Strand 4	B	308	318	anti-parallel
Strand 5	B	340	345	anti-parallel
Strand 6	B	348	352	anti-parallel
Strand 7	B	373	375	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	361	first strand
Strand 2	B	364	368	anti-parallel
Strand 3	A	38	49	parallel
Strand 4	A	29	33	anti-parallel
Strand 5	B	465	469	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	180	first strand
Strand 2	B	186	194	anti-parallel
Strand 3	A	51	60	parallel
Strand 4	B	296	305	anti-parallel
Strand 5	B	286	293	anti-parallel
Strand 6	B	243	244	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	98	99	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	131	136	first strand
Strand 2	L	177	182	anti-parallel
Strand 3	L	160	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	148	151	first strand
Strand 2	L	193	196	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	110	111	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	131	first strand
Strand 2	H	148	151	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	143	146	first strand
Strand 2	H	190	193	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	202	206	first strand
Strand 2	H	215	219	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	333	336	anti-parallel
Strand 3	B	394	398	anti-parallel
Strand 4	B	490	491	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	411	416	anti-parallel
Strand 3	B	438	443	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	434	first strand
Strand 2	B	422	426	anti-parallel
Strand 3	B	449	452	anti-parallel
Strand 4	B	455	458	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	532	first strand
Strand 2	B	537	539	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ULJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ULJ