Analysis of interatomic Contacts of Structural Units in PDB entry:
8UMC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UMC entry

There are 4 chains in PDB entry 8UMC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4ILE 325
B
 MET 1LEU 123
C
 PRO 4ILE 325
D
 MET 1LEU 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 8UMC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 21Right-handed alpha
Helix 2
AA2
A
25 36Right-handed alpha
Helix 3
AA3
A
44 49Right-handed alpha
Helix 4
AA4
A
56 71Right-handed alpha
Helix 5
AA5
A
92 111Right-handed alpha
Helix 6
AA6
A
122 129Right-handed alpha
Helix 7
AA7
A
129 137Right-handed alpha
Helix 8
AA8
A
152 164Right-handed alpha
Helix 9
AA9
A
176 180Right-handed 310
Helix 10
AB1
A
184 194Right-handed alpha
Helix 11
AB2
A
197 210Right-handed alpha
Helix 12
AB3
A
213 225Right-handed alpha
Helix 13
AB4
A
227 240Right-handed alpha
Helix 14
AB5
A
244 250Right-handed 310
Helix 15
AB6
A
279 286Right-handed alpha
Helix 16
AB7
A
309 325Right-handed alpha
Helix 17
AB8
B
34 36Right-handed 310
Helix 18
AB9
B
49 51Right-handed 310
Helix 19
AC1
B
65 69Right-handed 310
Helix 20
AC2
C
15 21Right-handed alpha
Helix 21
AC3
C
25 37Right-handed alpha
Helix 22
AC4
C
44 49Right-handed alpha
Helix 23
AC5
C
56 71Right-handed alpha
Helix 24
AC6
C
92 111Right-handed alpha
Helix 25
AC7
C
122 129Right-handed alpha
Helix 26
AC8
C
129 137Right-handed alpha
Helix 27
AC9
C
152 162Right-handed alpha
Helix 28
AD1
C
176 179Right-handed 310
Helix 29
AD2
C
184 194Right-handed alpha
Helix 30
AD3
C
197 211Right-handed alpha
Helix 31
AD4
C
213 224Right-handed alpha
Helix 32
AD5
C
227 240Right-handed alpha
Helix 33
AD6
C
244 250Right-handed 310
Helix 34
AD7
C
251 255Right-handed 310
Helix 35
AD8
C
279 287Right-handed alpha
Helix 36
AD9
C
298 303Right-handed alpha
Helix 37
AE1
C
309 325Right-handed alpha
Helix 38
AE2
D
49 51Right-handed 310
Helix 39
AE3
D
65 67Right-handed 310
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There are 9 sheets in PDB entry 8UMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
139 144parallel
Strand 3
A
114 117parallel
Strand 4
A
73 78parallel
Strand 5
A
40 43parallel
Strand 6
A
7 11parallel
Strand 7
A
291 296parallel
Strand 8
A
258 262parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
18 20anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
81 85anti-parallel
Strand 3
B
53 57anti-parallel
Strand 4
B
60 63anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
74 75anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
38 43anti-parallel
Strand 3
B
94 104anti-parallel
Strand 4
B
113 123anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 174first strand
Strand 2
C
139 144parallel
Strand 3
C
114 117parallel
Strand 4
C
73 78parallel
Strand 5
C
40 43parallel
Strand 6
C
7 11parallel
Strand 7
C
291 296parallel
Strand 8
C
258 262parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 15first strand
Strand 2
D
18 23anti-parallel
Strand 3
D
81 85anti-parallel
Strand 4
D
53 55anti-parallel
Strand 5
D
62 63anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 32first strand
Strand 2
D
74 75anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 47first strand
Strand 2
D
36 43anti-parallel
Strand 3
D
95 104anti-parallel
Strand 4
D
113 122anti-parallel
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