Analysis of interatomic Contacts of Structural Units in PDB entry:
8UMD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UMD entry

There are 6 chains in PDB entry 8UMD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 514GLU 560
B
 MET 1VAL 331
C
 ASP 34PRO 323
D
 ASP 55LEU 135
E
 ASP 55LEU 135
F
 ILE 57ARG 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8UMD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
514 543Right-handed alpha
Helix 2
AA2
A
543 558Right-handed alpha
Helix 3
AA3
B
5 18Right-handed alpha
Helix 4
AA4
B
18 27Right-handed alpha
Helix 5
AA5
B
30 43Right-handed alpha
Helix 6
AA6
B
48 67Right-handed alpha
Helix 7
AA7
B
74 101Right-handed alpha
Helix 8
AA8
B
105 113Right-handed alpha
Helix 9
AA9
B
114 123Right-handed alpha
Helix 10
AB1
B
126 137Right-handed alpha
Helix 11
AB2
B
138 147Right-handed alpha
Helix 12
AB3
B
150 163Right-handed alpha
Helix 13
AB4
B
168 183Right-handed alpha
Helix 14
AB5
B
198 204Right-handed alpha
Helix 15
AB6
B
207 222Right-handed alpha
Helix 16
AB7
B
222 235Right-handed alpha
Helix 17
AB8
B
237 241Right-handed 310
Helix 18
AB9
B
242 252Right-handed alpha
Helix 19
AC1
B
255 266Right-handed alpha
Helix 20
AC2
B
267 276Right-handed alpha
Helix 21
AC3
B
279 293Right-handed alpha
Helix 22
AC4
B
297 318Right-handed alpha
Helix 23
AC5
C
51 74Right-handed alpha
Helix 24
AC6
C
89 95Right-handed alpha
Helix 25
AC7
C
119 131Right-handed alpha
Helix 26
AC8
C
147 171Right-handed alpha
Helix 27
AC9
C
185 189Right-handed 310
Helix 28
AD1
C
221 225Right-handed alpha
Helix 29
AD2
C
227 233Right-handed alpha
Helix 30
AD3
C
241 255Right-handed alpha
Helix 31
AD4
C
271 278Right-handed alpha
Helix 32
AD5
D
74 81Right-handed alpha
Helix 33
AD6
D
127 134Right-handed alpha
Helix 34
AD7
E
75 81Right-handed alpha
Helix 35
AD8
E
130 135Right-handed alpha
Helix 36
AD9
F
75 81Right-handed alpha
Helix 37
AE1
F
127 136Right-handed alpha
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There are 5 sheets in PDB entry 8UMD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 36first strand
Strand 2
E
104 114anti-parallel
Strand 3
E
97 101anti-parallel
Strand 4
E
61 74anti-parallel
Strand 5
E
118 125first strand
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
86 92first strand
Strand 2
F
117 125anti-parallel
Strand 3
F
104 114anti-parallel
Strand 4
F
97 101anti-parallel
Strand 5
F
61 69anti-parallel
Strand 6
E
61 74anti-parallel
Strand 7
E
97 101anti-parallel
Strand 8
E
104 114anti-parallel
Strand 9
F
72 74first strand
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 81first strand
Strand 2
C
198 208anti-parallel
Strand 3
C
85 88anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 81first strand
Strand 2
C
198 208anti-parallel
Strand 3
C
211 220anti-parallel
Strand 4
C
114 118anti-parallel
Strand 5
C
101 108anti-parallel
Strand 6
C
176 183anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
283 284first strand
Strand 2
D
117 125anti-parallel
Strand 3
D
104 114anti-parallel
Strand 4
D
97 101anti-parallel
Strand 5
D
62 71anti-parallel
Strand 6
C
261 270anti-parallel
Strand 7
C
292 296anti-parallel
Strand 8
C
299 309anti-parallel
Strand 9
C
312 320anti-parallel
Strand 10
D
86 92anti-parallel
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