Analysis of interatomic Contacts of Structural Units in PDB entry:
8UMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UMF entry

There are 5 chains in PDB entry 8UMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLN 1409
B
 A 1 U 121
C
 C 43 A 60
D
 T 34 T 52
E
 T 21 C 35
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 8UMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 82Right-handed alpha
Helix 2
AA2
A
86 98Right-handed alpha
Helix 3
AA3
A
111 115Right-handed 310
Helix 4
AA4
A
118 123Right-handed 310
Helix 5
AA5
A
134 148Right-handed alpha
Helix 6
AA6
A
150 164Right-handed alpha
Helix 7
AA7
A
167 178Right-handed alpha
Helix 8
AA8
A
181 200Right-handed alpha
Helix 9
AA9
A
211 220Right-handed alpha
Helix 10
AB1
A
223 225Right-handed 310
Helix 11
AB2
A
226 233Right-handed alpha
Helix 12
AB3
A
235 248Right-handed alpha
Helix 13
AB4
A
250 259Right-handed alpha
Helix 14
AB5
A
260 266Right-handed 310
Helix 15
AB6
A
269 282Right-handed alpha
Helix 16
AB7
A
290 303Right-handed alpha
Helix 17
AB8
A
306 314Right-handed alpha
Helix 18
AB9
A
340 348Right-handed alpha
Helix 19
AC1
A
350 361Right-handed alpha
Helix 20
AC2
A
362 366Right-handed 310
Helix 21
AC3
A
371 376Right-handed alpha
Helix 22
AC4
A
381 391Right-handed alpha
Helix 23
AC5
A
397 412Right-handed alpha
Helix 24
AC6
A
421 426Right-handed alpha
Helix 25
AC7
A
432 448Right-handed alpha
Helix 26
AC8
A
451 471Right-handed alpha
Helix 27
AC9
A
472 477Right-handed 310
Helix 28
AD1
A
493 506Right-handed alpha
Helix 29
AD2
A
513 517Right-handed 310
Helix 30
AD3
A
526 541Right-handed alpha
Helix 31
AD4
A
543 557Right-handed alpha
Helix 32
AD5
A
562 586Right-handed alpha
Helix 33
AD6
A
589 594Right-handed alpha
Helix 34
AD7
A
598 610Right-handed alpha
Helix 35
AD8
A
620 632Right-handed alpha
Helix 36
AD9
A
652 674Right-handed alpha
Helix 37
AE1
A
699 707Right-handed alpha
Helix 38
AE2
A
729 738Right-handed alpha
Helix 39
AE3
A
760 769Right-handed alpha
Helix 40
AE4
A
774 776Right-handed 310
Helix 41
AE5
A
782 788Right-handed alpha
Helix 42
AE6
A
795 799Right-handed 310
Helix 43
AE7
A
800 809Right-handed alpha
Helix 44
AE8
A
812 826Right-handed alpha
Helix 45
AE9
A
828 834Right-handed alpha
Helix 46
AF1
A
835 838Right-handed 310
Helix 47
AF2
A
839 849Right-handed alpha
Helix 48
AF3
A
850 852Right-handed 310
Helix 49
AF4
A
856 866Right-handed alpha
Helix 50
AF5
A
868 873Right-handed alpha
Helix 51
AF6
A
877 893Right-handed alpha
Helix 52
AF7
A
893 901Right-handed alpha
Helix 53
AF8
A
913 920Right-handed alpha
Helix 54
AF9
A
920 928Right-handed alpha
Helix 55
AG1
A
929 932Right-handed 310
Helix 56
AG2
A
940 956Right-handed alpha
Helix 57
AG3
A
958 966Right-handed alpha
Helix 58
AG4
A
972 981Right-handed alpha
Helix 59
AG5
A
1003 1007Right-handed 310
Helix 60
AG6
A
1046 1052Right-handed alpha
Helix 61
AG7
A
1074 1088Right-handed alpha
Helix 62
AG8
A
1091 1104Right-handed alpha
Helix 63
AG9
A
1126 1131Right-handed alpha
Helix 64
AH1
A
1132 1135Right-handed 310
Helix 65
AH2
A
1156 1166Right-handed alpha
Helix 66
AH3
A
1188 1197Right-handed alpha
Helix 67
AH4
A
1325 1333Right-handed alpha
Helix 68
AH5
A
1338 1342Right-handed 310
Helix 69
AH6
A
1349 1361Right-handed alpha
Helix 70
AH7
A
1368 1370Right-handed 310
Helix 71
AH8
A
1392 1409Right-handed alpha
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There are 10 sheets in PDB entry 8UMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
903 912first strand
Strand 2
A
682 691parallel
Strand 3
A
3 10parallel
Strand 4
A
15 23anti-parallel
Strand 5
A
34 39anti-parallel
Strand 6
A
989 991parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 339first strand
Strand 2
A
482 484anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 521first strand
Strand 2
A
524 525anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
754 757first strand
Strand 2
A
778 781anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1215 1218first strand
Strand 2
A
1105 1112anti-parallel
Strand 3
A
1011 1019anti-parallel
Strand 4
A
1237 1243anti-parallel
Strand 5
A
1225 1231anti-parallel
Strand 6
A
1276 1278anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1040 1042first strand
Strand 2
A
1028 1032anti-parallel
Strand 3
A
1022 1025anti-parallel
Strand 4
A
1070 1073anti-parallel
Strand 5
A
1057 1059anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1117 1118first strand
Strand 2
A
1123 1124anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1137 1141first strand
Strand 2
A
1150 1154anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1266 1267first strand
Strand 2
A
1249 1254anti-parallel
Strand 3
A
1288 1291anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1296 1297first strand
Strand 2
A
1306 1310anti-parallel
Strand 3
A
1318 1324anti-parallel
Strand 4
A
1381 1387anti-parallel
Strand 5
A
1372 1377anti-parallel
Strand 6
A
1345 1347anti-parallel
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