Analysis of interatomic Contacts of Structural Units in PDB entry:
8UMG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UMG entry

There are 3 chains in PDB entry 8UMG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 12LYS 187
B
 GLU 12LYS 187
C
 GLU 11LYS 96
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8UMG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 34Right-handed 310
Helix 2
AA2
A
35 42Right-handed alpha
Helix 3
AA3
A
76 83Right-handed alpha
Helix 4
AA4
A
87 104Right-handed alpha
Helix 5
AA5
A
109 130Right-handed alpha
Helix 6
AA6
A
159 163Right-handed 310
Helix 7
AA7
A
168 185Right-handed alpha
Helix 8
AA8
B
36 43Right-handed alpha
Helix 9
AA9
B
69 73Right-handed 310
Helix 10
AB1
B
78 83Right-handed alpha
Helix 11
AB2
B
89 108Right-handed alpha
Helix 12
AB3
B
110 131Right-handed alpha
Helix 13
AB4
B
160 164Right-handed 310
Helix 14
AB5
B
168 174Right-handed alpha
Helix 15
AB6
B
176 185Right-handed alpha
Helix 16
AB7
C
30 34Right-handed 310
Helix 17
AB8
C
35 40Right-handed alpha
Helix 18
AB9
C
68 72Right-handed 310
Helix 19
AC1
C
76 83Right-handed alpha
Helix 20
AC2
C
88 96Right-handed alpha
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There are 5 sheets in PDB entry 8UMG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 25first strand
Strand 2
A
57 64anti-parallel
Strand 3
A
73 75anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 139first strand
Strand 2
A
150 155anti-parallel
Strand 3
A
164 167anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 25first strand
Strand 2
B
59 65anti-parallel
Strand 3
B
74 77anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 140first strand
Strand 2
B
152 156anti-parallel
Strand 3
B
165 167anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 24first strand
Strand 2
C
58 64anti-parallel
Strand 3
C
73 75anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il