Analysis of interatomic Contacts of Structural Units in PDB entry:
8UML

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UML entry

There are 2 chains in PDB entry 8UML (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	ASN 444
B	GLY 2	ASN 444

There are 41 helices in PDB entry 8UML. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	37	Right-handed alpha
Helix 2	AA2	A	49	62	Right-handed alpha
Helix 3	AA3	A	70	72	Right-handed 310
Helix 4	AA4	A	84	89	Right-handed 310
Helix 5	AA5	A	100	115	Right-handed alpha
Helix 6	AA6	A	127	131	Right-handed 310
Helix 7	AA7	A	133	143	Right-handed alpha
Helix 8	AA8	A	179	189	Right-handed alpha
Helix 9	AA9	A	190	192	Right-handed 310
Helix 10	AB1	A	206	220	Right-handed alpha
Helix 11	AB2	A	252	267	Right-handed alpha
Helix 12	AB3	A	281	284	Right-handed 310
Helix 13	AB4	A	285	293	Right-handed alpha
Helix 14	AB5	A	332	340	Right-handed alpha
Helix 15	AB6	A	341	343	Right-handed 310
Helix 16	AB7	A	352	358	Right-handed 310
Helix 17	AB8	A	361	373	Right-handed alpha
Helix 18	AB9	A	402	410	Right-handed alpha
Helix 19	AC1	A	411	415	Right-handed 310
Helix 20	AC2	A	424	430	Right-handed 310
Helix 21	AC3	A	433	441	Right-handed alpha
Helix 22	AC4	B	23	37	Right-handed alpha
Helix 23	AC5	B	49	62	Right-handed alpha
Helix 24	AC6	B	84	89	Right-handed 310
Helix 25	AC7	B	100	115	Right-handed alpha
Helix 26	AC8	B	127	131	Right-handed 310
Helix 27	AC9	B	133	143	Right-handed alpha
Helix 28	AD1	B	179	189	Right-handed alpha
Helix 29	AD2	B	190	192	Right-handed 310
Helix 30	AD3	B	206	220	Right-handed alpha
Helix 31	AD4	B	252	267	Right-handed alpha
Helix 32	AD5	B	281	284	Right-handed 310
Helix 33	AD6	B	285	293	Right-handed alpha
Helix 34	AD7	B	332	340	Right-handed alpha
Helix 35	AD8	B	341	343	Right-handed 310
Helix 36	AD9	B	352	358	Right-handed 310
Helix 37	AE1	B	361	374	Right-handed alpha
Helix 38	AE2	B	402	411	Right-handed alpha
Helix 39	AE3	B	412	415	Right-handed 310
Helix 40	AE4	B	424	430	Right-handed 310
Helix 41	AE5	B	433	441	Right-handed alpha

There are 14 sheets in PDB entry 8UML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	419	422	anti-parallel
Strand 3	A	396	397	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	14	first strand
Strand 2	A	442	443	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	269	273	parallel
Strand 3	A	303	307	anti-parallel
Strand 4	A	296	300	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	69	first strand
Strand 2	A	74	78	anti-parallel
Strand 3	A	40	44	anti-parallel
Strand 4	A	246	248	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	96	first strand
Strand 2	A	119	123	parallel
Strand 3	A	158	161	anti-parallel
Strand 4	A	146	149	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	175	first strand
Strand 2	A	196	204	parallel
Strand 3	A	232	235	anti-parallel
Strand 4	A	224	226	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	325	first strand
Strand 2	A	347	350	parallel
Strand 3	A	383	387	anti-parallel
Strand 4	A	376	379	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	8	first strand
Strand 2	B	419	422	anti-parallel
Strand 3	B	396	397	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	442	443	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	269	273	parallel
Strand 3	B	303	307	anti-parallel
Strand 4	B	296	300	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	69	first strand
Strand 2	B	74	78	anti-parallel
Strand 3	B	40	44	anti-parallel
Strand 4	B	246	248	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	96	first strand
Strand 2	B	119	123	parallel
Strand 3	B	158	161	anti-parallel
Strand 4	B	147	149	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	175	first strand
Strand 2	B	196	204	parallel
Strand 3	B	232	235	anti-parallel
Strand 4	B	225	226	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	325	first strand
Strand 2	B	347	350	parallel
Strand 3	B	383	387	anti-parallel
Strand 4	B	376	379	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UML

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UML