Analysis of interatomic Contacts of Structural Units in PDB entry:
8UMM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UMM entry

There are 2 chains in PDB entry 8UMM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	ASN 444
B	GLY 2	ASN 444

There are 38 helices in PDB entry 8UMM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	37	Right-handed alpha
Helix 2	AA2	A	49	62	Right-handed alpha
Helix 3	AA3	A	100	115	Right-handed alpha
Helix 4	AA4	A	127	131	Right-handed 310
Helix 5	AA5	A	133	143	Right-handed alpha
Helix 6	AA6	A	179	189	Right-handed alpha
Helix 7	AA7	A	190	192	Right-handed 310
Helix 8	AA8	A	206	220	Right-handed alpha
Helix 9	AA9	A	252	267	Right-handed alpha
Helix 10	AB1	A	281	284	Right-handed 310
Helix 11	AB2	A	285	293	Right-handed alpha
Helix 12	AB3	A	332	340	Right-handed alpha
Helix 13	AB4	A	352	358	Right-handed 310
Helix 14	AB5	A	361	373	Right-handed alpha
Helix 15	AB6	A	402	410	Right-handed alpha
Helix 16	AB7	A	411	415	Right-handed 310
Helix 17	AB8	A	424	430	Right-handed 310
Helix 18	AB9	A	433	441	Right-handed alpha
Helix 19	AC1	B	23	37	Right-handed alpha
Helix 20	AC2	B	49	62	Right-handed alpha
Helix 21	AC3	B	84	89	Right-handed 310
Helix 22	AC4	B	100	115	Right-handed alpha
Helix 23	AC5	B	127	131	Right-handed 310
Helix 24	AC6	B	133	143	Right-handed alpha
Helix 25	AC7	B	179	189	Right-handed alpha
Helix 26	AC8	B	190	192	Right-handed 310
Helix 27	AC9	B	206	220	Right-handed alpha
Helix 28	AD1	B	252	267	Right-handed alpha
Helix 29	AD2	B	281	284	Right-handed 310
Helix 30	AD3	B	285	293	Right-handed alpha
Helix 31	AD4	B	332	340	Right-handed alpha
Helix 32	AD5	B	341	343	Right-handed 310
Helix 33	AD6	B	352	358	Right-handed 310
Helix 34	AD7	B	361	373	Right-handed alpha
Helix 35	AD8	B	402	411	Right-handed alpha
Helix 36	AD9	B	412	415	Right-handed 310
Helix 37	AE1	B	424	430	Right-handed 310
Helix 38	AE2	B	433	441	Right-handed alpha

There are 15 sheets in PDB entry 8UMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	419	422	anti-parallel
Strand 3	A	396	397	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	14	first strand
Strand 2	A	442	443	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	19	first strand
Strand 2	A	269	273	parallel
Strand 3	A	303	307	anti-parallel
Strand 4	A	296	299	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	74	78	anti-parallel
Strand 3	A	40	44	anti-parallel
Strand 4	A	246	248	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	96	first strand
Strand 2	A	119	123	parallel
Strand 3	A	158	161	anti-parallel
Strand 4	A	146	148	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	173	first strand
Strand 2	A	196	200	parallel
Strand 3	A	232	235	anti-parallel
Strand 4	A	225	226	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	320	first strand
Strand 2	A	343	344	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	325	first strand
Strand 2	A	347	350	parallel
Strand 3	A	383	387	anti-parallel
Strand 4	A	376	379	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	8	first strand
Strand 2	B	419	422	anti-parallel
Strand 3	B	396	397	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	442	443	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	19	first strand
Strand 2	B	269	273	parallel
Strand 3	B	303	307	anti-parallel
Strand 4	B	296	299	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	69	first strand
Strand 2	B	74	78	anti-parallel
Strand 3	B	40	44	anti-parallel
Strand 4	B	246	248	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	96	first strand
Strand 2	B	119	123	parallel
Strand 3	B	158	161	anti-parallel
Strand 4	B	146	148	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	175	first strand
Strand 2	B	196	204	parallel
Strand 3	B	232	235	anti-parallel
Strand 4	B	225	226	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	325	first strand
Strand 2	B	347	350	parallel
Strand 3	B	384	387	anti-parallel
Strand 4	B	376	379	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UMM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UMM