Analysis of interatomic Contacts of Structural Units in PDB entry:
8UMT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UMT entry

There are 8 chains in PDB entry 8UMT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 165	GLU 863
B	TYR 34	MET 349
C	ASN 19	ALA 340
D	PRO 37	GLN 361
E	VAL 5	ASP 349
F	MET 1	GLU 258
G	MET 1	SER 261
H	MET 1	SER 261

There are112 helices in PDB entry 8UMT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	297	310	Right-handed alpha
Helix 2	AA2	A	311	314	Right-handed 310
Helix 3	AA3	A	347	355	Right-handed alpha
Helix 4	AA4	A	379	391	Right-handed alpha
Helix 5	AA5	A	405	414	Right-handed alpha
Helix 6	AA6	A	441	453	Right-handed alpha
Helix 7	AA7	A	495	499	Right-handed 310
Helix 8	AA8	A	501	505	Right-handed 310
Helix 9	AA9	A	514	530	Right-handed alpha
Helix 10	AB1	A	534	545	Right-handed alpha
Helix 11	AB2	A	549	563	Right-handed alpha
Helix 12	AB3	A	568	573	Right-handed alpha
Helix 13	AB4	A	583	595	Right-handed alpha
Helix 14	AB5	A	627	642	Right-handed alpha
Helix 15	AB6	A	645	656	Right-handed alpha
Helix 16	AB7	A	668	690	Right-handed alpha
Helix 17	AB8	A	699	709	Right-handed alpha
Helix 18	AB9	A	721	744	Right-handed alpha
Helix 19	AC1	A	745	750	Right-handed alpha
Helix 20	AC2	A	753	760	Right-handed alpha
Helix 21	AC3	A	761	769	Right-handed alpha
Helix 22	AC4	A	782	800	Right-handed alpha
Helix 23	AC5	A	820	825	Right-handed alpha
Helix 24	AC6	A	837	863	Right-handed alpha
Helix 25	AC7	B	37	42	Right-handed alpha
Helix 26	AC8	B	46	50	Right-handed 310
Helix 27	AC9	B	54	67	Right-handed alpha
Helix 28	AD1	B	85	94	Right-handed alpha
Helix 29	AD2	B	95	98	Right-handed 310
Helix 30	AD3	B	112	126	Right-handed alpha
Helix 31	AD4	B	147	161	Right-handed alpha
Helix 32	AD5	B	178	184	Right-handed alpha
Helix 33	AD6	B	194	210	Right-handed alpha
Helix 34	AD7	B	214	226	Right-handed alpha
Helix 35	AD8	B	228	243	Right-handed alpha
Helix 36	AD9	B	247	256	Right-handed alpha
Helix 37	AE1	B	259	272	Right-handed alpha
Helix 38	AE2	B	275	287	Right-handed alpha
Helix 39	AE3	B	291	305	Right-handed alpha
Helix 40	AE4	B	309	330	Right-handed alpha
Helix 41	AE5	B	333	348	Right-handed alpha
Helix 42	AE6	C	21	26	Right-handed alpha
Helix 43	AE7	C	37	50	Right-handed alpha
Helix 44	AE8	C	66	78	Right-handed alpha
Helix 45	AE9	C	103	110	Right-handed alpha
Helix 46	AF1	C	127	130	Right-handed 310
Helix 47	AF2	C	131	145	Right-handed alpha
Helix 48	AF3	C	157	161	Right-handed 310
Helix 49	AF4	C	162	169	Right-handed alpha
Helix 50	AF5	C	178	193	Right-handed alpha
Helix 51	AF6	C	198	209	Right-handed alpha
Helix 52	AF7	C	212	227	Right-handed alpha
Helix 53	AF8	C	231	240	Right-handed alpha
Helix 54	AF9	C	243	256	Right-handed alpha
Helix 55	AG1	C	258	274	Right-handed alpha
Helix 56	AG2	C	276	288	Right-handed alpha
Helix 57	AG3	C	294	314	Right-handed alpha
Helix 58	AG4	C	317	340	Right-handed alpha
Helix 59	AG5	D	39	44	Right-handed alpha
Helix 60	AG6	D	55	69	Right-handed alpha
Helix 61	AG7	D	83	104	Right-handed alpha
Helix 62	AG8	D	115	128	Right-handed alpha
Helix 63	AG9	D	152	155	Right-handed 310
Helix 64	AH1	D	156	170	Right-handed alpha
Helix 65	AH2	D	182	186	Right-handed 310
Helix 66	AH3	D	187	193	Right-handed alpha
Helix 67	AH4	D	203	218	Right-handed alpha
Helix 68	AH5	D	223	234	Right-handed alpha
Helix 69	AH6	D	237	253	Right-handed alpha
Helix 70	AH7	D	258	266	Right-handed alpha
Helix 71	AH8	D	270	283	Right-handed alpha
Helix 72	AH9	D	285	299	Right-handed alpha
Helix 73	AI1	D	302	315	Right-handed alpha
Helix 74	AI2	D	320	341	Right-handed alpha
Helix 75	AI3	D	343	360	Right-handed alpha
Helix 76	AI4	E	12	16	Right-handed 310
Helix 77	AI5	E	19	32	Right-handed alpha
Helix 78	AI6	E	47	60	Right-handed alpha
Helix 79	AI7	E	62	66	Right-handed 310
Helix 80	AI8	E	96	100	Right-handed 310
Helix 81	AI9	E	103	117	Right-handed alpha
Helix 82	AJ1	E	137	140	Right-handed 310
Helix 83	AJ2	E	141	155	Right-handed alpha
Helix 84	AJ3	E	167	171	Right-handed 310
Helix 85	AJ4	E	172	177	Right-handed alpha
Helix 86	AJ5	E	188	202	Right-handed alpha
Helix 87	AJ6	E	208	219	Right-handed alpha
Helix 88	AJ7	E	222	237	Right-handed alpha
Helix 89	AJ8	E	249	265	Right-handed alpha
Helix 90	AJ9	E	267	284	Right-handed alpha
Helix 91	AK1	E	287	301	Right-handed alpha
Helix 92	AK2	E	306	323	Right-handed alpha
Helix 93	AK3	E	327	349	Right-handed alpha
Helix 94	AK4	F	9	19	Right-handed alpha
Helix 95	AK5	F	55	57	Right-handed 310
Helix 96	AK6	F	72	80	Right-handed alpha
Helix 97	AK7	F	141	155	Right-handed alpha
Helix 98	AK8	F	209	216	Right-handed alpha
Helix 99	AK9	F	218	222	Right-handed 310
Helix 100	AL1	G	8	20	Right-handed alpha
Helix 101	AL2	G	72	80	Right-handed alpha
Helix 102	AL3	G	141	152	Right-handed alpha
Helix 103	AL4	G	209	216	Right-handed alpha
Helix 104	AL5	G	217	222	Right-handed 310
Helix 105	AL6	H	8	10	Right-handed 310
Helix 106	AL7	H	11	16	Right-handed alpha
Helix 107	AL8	H	55	57	Right-handed 310
Helix 108	AL9	H	72	79	Right-handed alpha
Helix 109	AM1	H	141	152	Right-handed alpha
Helix 110	AM2	H	190	194	Right-handed 310
Helix 111	AM3	H	209	217	Right-handed alpha
Helix 112	AM4	H	218	222	Right-handed 310

There are 15 sheets in PDB entry 8UMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	180	first strand
Strand 2	A	188	191	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	399	first strand
Strand 2	A	430	435	parallel
Strand 3	A	486	490	parallel
Strand 4	A	369	373	parallel
Strand 5	A	506	507	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	532	533	first strand
Strand 2	A	566	567	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	807	first strand
Strand 2	A	813	817	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	136	141	parallel
Strand 3	B	165	171	parallel
Strand 4	B	72	75	parallel
Strand 5	B	186	189	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	90	first strand
Strand 2	C	120	125	parallel
Strand 3	C	149	155	parallel
Strand 4	C	56	59	parallel
Strand 5	C	170	173	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	229	230	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	174	180	parallel
Strand 3	D	145	150	parallel
Strand 4	D	105	109	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	75	first strand
Strand 2	E	81	88	anti-parallel
Strand 3	E	92	95	anti-parallel
Strand 4	E	131	135	parallel
Strand 5	E	162	164	parallel
Strand 6	E	38	41	parallel
Strand 7	E	180	183	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	88	92	anti-parallel
Strand 4	F	98	103	anti-parallel
Strand 5	F	112	117	anti-parallel
Strand 6	G	177	182	anti-parallel
Strand 7	G	167	172	anti-parallel
Strand 8	G	157	162	anti-parallel
Strand 9	G	203	208	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	25	30	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	46	53	anti-parallel
Strand 5	F	245	251	anti-parallel
Strand 6	F	233	240	anti-parallel
Strand 7	F	224	230	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	196	197	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	204	208	first strand
Strand 2	F	157	162	anti-parallel
Strand 3	F	167	173	anti-parallel
Strand 4	F	176	182	anti-parallel
Strand 5	H	110	117	anti-parallel
Strand 6	H	98	104	anti-parallel
Strand 7	H	89	92	anti-parallel
Strand 8	H	2	5	anti-parallel
Strand 9	H	59	61	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	61	first strand
Strand 2	G	2	6	anti-parallel
Strand 3	G	88	92	anti-parallel
Strand 4	G	98	104	anti-parallel
Strand 5	G	111	117	anti-parallel
Strand 6	H	178	182	anti-parallel
Strand 7	H	167	171	anti-parallel
Strand 8	H	157	162	anti-parallel
Strand 9	H	203	208	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	71	first strand
Strand 2	G	25	31	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	46	53	anti-parallel
Strand 5	G	245	251	anti-parallel
Strand 6	G	235	240	anti-parallel
Strand 7	G	224	229	anti-parallel
Strand 8	G	135	140	anti-parallel
Strand 9	G	196	197	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	71	first strand
Strand 2	H	25	31	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	46	53	anti-parallel
Strand 5	H	245	251	anti-parallel
Strand 6	H	235	239	anti-parallel
Strand 7	H	224	229	anti-parallel
Strand 8	H	135	140	anti-parallel
Strand 9	H	196	197	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UMT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UMT