Analysis of interatomic Contacts of Structural Units in PDB entry:
8UMU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UMU entry

There are 8 chains in PDB entry 8UMU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 165	GLU 863
B	TYR 34	MET 349
C	ASN 19	ALA 340
D	ALA 35	GLN 361
E	SER 2	ASP 349
F	MET 1	GLU 256
G	MET 1	SER 261
H	MET 1	GLU 258

There are112 helices in PDB entry 8UMU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	281	286	Right-handed alpha
Helix 2	AA2	A	290	294	Right-handed 310
Helix 3	AA3	A	297	311	Right-handed alpha
Helix 4	AA4	A	311	316	Right-handed alpha
Helix 5	AA5	A	347	356	Right-handed alpha
Helix 6	AA6	A	379	391	Right-handed alpha
Helix 7	AA7	A	405	416	Right-handed alpha
Helix 8	AA8	A	441	453	Right-handed alpha
Helix 9	AA9	A	495	497	Right-handed 310
Helix 10	AB1	A	498	503	Right-handed alpha
Helix 11	AB2	A	514	529	Right-handed alpha
Helix 12	AB3	A	534	545	Right-handed alpha
Helix 13	AB4	A	548	560	Right-handed alpha
Helix 14	AB5	A	586	595	Right-handed alpha
Helix 15	AB6	A	628	643	Right-handed alpha
Helix 16	AB7	A	645	654	Right-handed alpha
Helix 17	AB8	A	666	690	Right-handed alpha
Helix 18	AB9	A	692	698	Right-handed 310
Helix 19	AC1	A	699	709	Right-handed alpha
Helix 20	AC2	A	721	744	Right-handed alpha
Helix 21	AC3	A	745	752	Right-handed alpha
Helix 22	AC4	A	753	761	Right-handed alpha
Helix 23	AC5	A	762	769	Right-handed alpha
Helix 24	AC6	A	782	800	Right-handed alpha
Helix 25	AC7	A	820	825	Right-handed 310
Helix 26	AC8	A	837	863	Right-handed alpha
Helix 27	AC9	B	37	42	Right-handed alpha
Helix 28	AD1	B	53	67	Right-handed alpha
Helix 29	AD2	B	81	95	Right-handed alpha
Helix 30	AD3	B	97	101	Right-handed alpha
Helix 31	AD4	B	112	125	Right-handed alpha
Helix 32	AD5	B	142	146	Right-handed 310
Helix 33	AD6	B	147	161	Right-handed alpha
Helix 34	AD7	B	178	185	Right-handed alpha
Helix 35	AD8	B	194	210	Right-handed alpha
Helix 36	AD9	B	214	226	Right-handed alpha
Helix 37	AE1	B	228	244	Right-handed alpha
Helix 38	AE2	B	247	256	Right-handed alpha
Helix 39	AE3	B	259	272	Right-handed alpha
Helix 40	AE4	B	274	288	Right-handed alpha
Helix 41	AE5	B	291	305	Right-handed alpha
Helix 42	AE6	B	309	330	Right-handed alpha
Helix 43	AE7	B	333	348	Right-handed alpha
Helix 44	AE8	C	21	26	Right-handed alpha
Helix 45	AE9	C	37	50	Right-handed alpha
Helix 46	AF1	C	65	78	Right-handed alpha
Helix 47	AF2	C	82	85	Right-handed 310
Helix 48	AF3	C	103	110	Right-handed alpha
Helix 49	AF4	C	126	130	Right-handed 310
Helix 50	AF5	C	131	145	Right-handed alpha
Helix 51	AF6	C	157	161	Right-handed 310
Helix 52	AF7	C	162	167	Right-handed alpha
Helix 53	AF8	C	178	181	Right-handed 310
Helix 54	AF9	C	182	193	Right-handed alpha
Helix 55	AG1	C	198	209	Right-handed alpha
Helix 56	AG2	C	212	227	Right-handed alpha
Helix 57	AG3	C	231	240	Right-handed alpha
Helix 58	AG4	C	243	257	Right-handed alpha
Helix 59	AG5	C	258	274	Right-handed alpha
Helix 60	AG6	C	276	289	Right-handed alpha
Helix 61	AG7	C	294	313	Right-handed alpha
Helix 62	AG8	C	317	340	Right-handed alpha
Helix 63	AG9	D	55	69	Right-handed alpha
Helix 64	AH1	D	83	97	Right-handed alpha
Helix 65	AH2	D	97	104	Right-handed alpha
Helix 66	AH3	D	115	129	Right-handed alpha
Helix 67	AH4	D	151	155	Right-handed 310
Helix 68	AH5	D	156	170	Right-handed alpha
Helix 69	AH6	D	187	192	Right-handed alpha
Helix 70	AH7	D	206	218	Right-handed alpha
Helix 71	AH8	D	223	234	Right-handed alpha
Helix 72	AH9	D	237	253	Right-handed alpha
Helix 73	AI1	D	258	266	Right-handed alpha
Helix 74	AI2	D	270	283	Right-handed alpha
Helix 75	AI3	D	285	298	Right-handed alpha
Helix 76	AI4	D	302	316	Right-handed alpha
Helix 77	AI5	D	320	340	Right-handed alpha
Helix 78	AI6	D	343	360	Right-handed alpha
Helix 79	AI7	E	3	8	Right-handed alpha
Helix 80	AI8	E	12	16	Right-handed 310
Helix 81	AI9	E	19	32	Right-handed alpha
Helix 82	AJ1	E	47	60	Right-handed alpha
Helix 83	AJ2	E	103	118	Right-handed alpha
Helix 84	AJ3	E	122	127	Right-handed alpha
Helix 85	AJ4	E	141	155	Right-handed alpha
Helix 86	AJ5	E	167	171	Right-handed 310
Helix 87	AJ6	E	172	177	Right-handed alpha
Helix 88	AJ7	E	188	203	Right-handed alpha
Helix 89	AJ8	E	208	220	Right-handed alpha
Helix 90	AJ9	E	222	237	Right-handed alpha
Helix 91	AK1	E	249	265	Right-handed alpha
Helix 92	AK2	E	267	283	Right-handed alpha
Helix 93	AK3	E	287	300	Right-handed alpha
Helix 94	AK4	E	307	325	Right-handed alpha
Helix 95	AK5	E	327	349	Right-handed alpha
Helix 96	AK6	F	9	16	Right-handed alpha
Helix 97	AK7	F	18	23	Right-handed alpha
Helix 98	AK8	F	75	80	Right-handed alpha
Helix 99	AK9	F	141	151	Right-handed alpha
Helix 100	AL1	F	190	194	Right-handed 310
Helix 101	AL2	F	209	216	Right-handed alpha
Helix 102	AL3	F	217	219	Right-handed 310
Helix 103	AL4	G	9	18	Right-handed alpha
Helix 104	AL5	G	73	80	Right-handed alpha
Helix 105	AL6	G	141	155	Right-handed alpha
Helix 106	AL7	G	209	216	Right-handed alpha
Helix 107	AL8	G	217	222	Right-handed 310
Helix 108	AL9	H	9	20	Right-handed alpha
Helix 109	AM1	H	72	80	Right-handed alpha
Helix 110	AM2	H	141	153	Right-handed alpha
Helix 111	AM3	H	190	194	Right-handed 310
Helix 112	AM4	H	209	216	Right-handed alpha

There are 14 sheets in PDB entry 8UMU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	188	191	anti-parallel
Strand 3	A	177	180	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	399	first strand
Strand 2	A	430	435	parallel
Strand 3	A	486	490	parallel
Strand 4	A	369	373	parallel
Strand 5	A	506	509	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	807	first strand
Strand 2	A	813	817	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	136	140	parallel
Strand 3	B	165	170	parallel
Strand 4	B	72	75	parallel
Strand 5	B	186	189	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	90	first strand
Strand 2	C	120	124	parallel
Strand 3	C	149	155	parallel
Strand 4	C	56	59	parallel
Strand 5	C	170	173	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	229	230	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	109	first strand
Strand 2	D	145	150	parallel
Strand 3	D	174	180	parallel
Strand 4	D	73	77	parallel
Strand 5	D	194	198	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	75	first strand
Strand 2	E	81	88	anti-parallel
Strand 3	E	92	95	anti-parallel
Strand 4	E	130	134	parallel
Strand 5	E	159	165	parallel
Strand 6	E	38	41	parallel
Strand 7	E	180	183	parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	62	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	87	92	anti-parallel
Strand 4	F	98	104	anti-parallel
Strand 5	F	110	117	anti-parallel
Strand 6	G	176	183	anti-parallel
Strand 7	G	166	173	anti-parallel
Strand 8	G	157	163	anti-parallel
Strand 9	G	203	208	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	25	31	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	46	53	anti-parallel
Strand 5	F	245	251	anti-parallel
Strand 6	F	235	241	anti-parallel
Strand 7	F	224	229	anti-parallel
Strand 8	F	135	140	anti-parallel
Strand 9	F	196	199	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	203	208	first strand
Strand 2	F	157	163	anti-parallel
Strand 3	F	166	173	anti-parallel
Strand 4	F	176	182	anti-parallel
Strand 5	H	111	117	anti-parallel
Strand 6	H	98	104	anti-parallel
Strand 7	H	87	92	anti-parallel
Strand 8	H	2	6	anti-parallel
Strand 9	H	59	62	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	61	first strand
Strand 2	G	2	6	anti-parallel
Strand 3	G	87	92	anti-parallel
Strand 4	G	98	104	anti-parallel
Strand 5	G	110	117	anti-parallel
Strand 6	H	176	182	anti-parallel
Strand 7	H	166	173	anti-parallel
Strand 8	H	157	163	anti-parallel
Strand 9	H	203	208	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	71	first strand
Strand 2	G	25	31	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	46	53	anti-parallel
Strand 5	G	245	251	anti-parallel
Strand 6	G	233	241	anti-parallel
Strand 7	G	224	230	anti-parallel
Strand 8	G	135	140	anti-parallel
Strand 9	G	196	199	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	71	first strand
Strand 2	H	25	31	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	46	53	anti-parallel
Strand 5	H	245	251	anti-parallel
Strand 6	H	235	241	anti-parallel
Strand 7	H	224	229	anti-parallel
Strand 8	H	135	140	anti-parallel
Strand 9	H	196	198	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UMU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UMU