Analysis of interatomic Contacts of Structural Units in PDB entry:
8UMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UMX entry

There are 6 chains in PDB entry 8UMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 517GLU 560
B
 MET 1VAL 331
C
 ARG 36ASN 322
D
 ASP 55ARG 137
E
 LEU 56ARG 134
F
 GLN 52SER 136
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8UMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
517 543Right-handed alpha
Helix 2
AA2
A
543 559Right-handed alpha
Helix 3
AA3
B
5 18Right-handed alpha
Helix 4
AA4
B
18 28Right-handed alpha
Helix 5
AA5
B
30 42Right-handed alpha
Helix 6
AA6
B
48 66Right-handed alpha
Helix 7
AA7
B
72 85Right-handed alpha
Helix 8
AA8
B
86 111Right-handed alpha
Helix 9
AA9
B
114 124Right-handed alpha
Helix 10
AB1
B
126 137Right-handed alpha
Helix 11
AB2
B
138 147Right-handed alpha
Helix 12
AB3
B
150 163Right-handed alpha
Helix 13
AB4
B
168 187Right-handed alpha
Helix 14
AB5
B
196 206Right-handed alpha
Helix 15
AB6
B
207 222Right-handed alpha
Helix 16
AB7
B
222 234Right-handed alpha
Helix 17
AB8
B
236 242Right-handed 310
Helix 18
AB9
B
243 252Right-handed alpha
Helix 19
AC1
B
255 266Right-handed alpha
Helix 20
AC2
B
267 275Right-handed alpha
Helix 21
AC3
B
279 293Right-handed alpha
Helix 22
AC4
B
297 318Right-handed alpha
Helix 23
AC5
C
51 74Right-handed alpha
Helix 24
AC6
C
89 96Right-handed alpha
Helix 25
AC7
C
119 132Right-handed alpha
Helix 26
AC8
C
147 173Right-handed alpha
Helix 27
AC9
C
185 189Right-handed 310
Helix 28
AD1
C
222 225Right-handed 310
Helix 29
AD2
C
227 233Right-handed alpha
Helix 30
AD3
C
240 254Right-handed alpha
Helix 31
AD4
C
272 277Right-handed alpha
Helix 32
AD5
D
75 80Right-handed alpha
Helix 33
AD6
D
127 136Right-handed alpha
Helix 34
AD7
E
75 80Right-handed alpha
Helix 35
AD8
E
127 131Right-handed 310
Helix 36
AD9
F
75 80Right-handed alpha
Helix 37
AE1
F
127 136Right-handed alpha
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There are 6 sheets in PDB entry 8UMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 81first strand
Strand 2
C
198 208anti-parallel
Strand 3
C
85 88anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 81first strand
Strand 2
C
198 208anti-parallel
Strand 3
C
211 220anti-parallel
Strand 4
C
114 118anti-parallel
Strand 5
C
101 108anti-parallel
Strand 6
C
176 183anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
258 259first strand
Strand 2
D
73 74anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
262 264first strand
Strand 2
C
292 296anti-parallel
Strand 3
C
299 309anti-parallel
Strand 4
C
312 319anti-parallel
Strand 5
D
86 92anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
267 271first strand
Strand 2
D
61 67anti-parallel
Strand 3
D
97 101anti-parallel
Strand 4
D
104 114anti-parallel
Strand 5
D
117 122anti-parallel
Strand 6
C
283 286anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
86 88first strand
Strand 2
F
118 125anti-parallel
Strand 3
F
104 113anti-parallel
Strand 4
F
97 101anti-parallel
Strand 5
F
61 73anti-parallel
Strand 6
E
62 74anti-parallel
Strand 7
E
98 101anti-parallel
Strand 8
E
104 111anti-parallel
Strand 9
E
118 125anti-parallel
Strand 10
F
86 89anti-parallel
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