Analysis of interatomic Contacts of Structural Units in PDB entry:
8UMY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UMY entry

There are 10 chains in PDB entry 8UMY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 165	GLU 863
B	HIS 33	PRO 351
C	LYS 16	ALA 340
D	ALA 35	CYS 363
E	SER 2	ASP 349
F	MET 1	GLU 258
G	MET 1	SER 261
H	MET 1	SER 261
I	T 4	C 30
J	G 1	A 20

There are123 helices in PDB entry 8UMY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	281	286	Right-handed alpha
Helix 2	AA2	A	297	309	Right-handed alpha
Helix 3	AA3	A	310	312	Right-handed 310
Helix 4	AA4	A	347	356	Right-handed alpha
Helix 5	AA5	A	379	391	Right-handed alpha
Helix 6	AA6	A	405	418	Right-handed alpha
Helix 7	AA7	A	437	440	Right-handed 310
Helix 8	AA8	A	441	453	Right-handed alpha
Helix 9	AA9	A	495	497	Right-handed 310
Helix 10	AB1	A	498	503	Right-handed alpha
Helix 11	AB2	A	514	529	Right-handed alpha
Helix 12	AB3	A	534	545	Right-handed alpha
Helix 13	AB4	A	548	561	Right-handed alpha
Helix 14	AB5	A	568	574	Right-handed alpha
Helix 15	AB6	A	585	595	Right-handed alpha
Helix 16	AB7	A	627	643	Right-handed alpha
Helix 17	AB8	A	644	656	Right-handed alpha
Helix 18	AB9	A	666	687	Right-handed alpha
Helix 19	AC1	A	691	695	Right-handed 310
Helix 20	AC2	A	699	709	Right-handed alpha
Helix 21	AC3	A	721	742	Right-handed alpha
Helix 22	AC4	A	745	750	Right-handed alpha
Helix 23	AC5	A	753	760	Right-handed alpha
Helix 24	AC6	A	762	769	Right-handed alpha
Helix 25	AC7	A	777	781	Right-handed 310
Helix 26	AC8	A	782	799	Right-handed alpha
Helix 27	AC9	A	821	826	Right-handed alpha
Helix 28	AD1	A	837	863	Right-handed alpha
Helix 29	AD2	B	37	42	Right-handed alpha
Helix 30	AD3	B	46	50	Right-handed 310
Helix 31	AD4	B	53	67	Right-handed alpha
Helix 32	AD5	B	81	95	Right-handed alpha
Helix 33	AD6	B	96	98	Right-handed 310
Helix 34	AD7	B	112	119	Right-handed alpha
Helix 35	AD8	B	119	126	Right-handed alpha
Helix 36	AD9	B	147	161	Right-handed alpha
Helix 37	AE1	B	178	184	Right-handed alpha
Helix 38	AE2	B	194	210	Right-handed alpha
Helix 39	AE3	B	214	226	Right-handed alpha
Helix 40	AE4	B	228	243	Right-handed alpha
Helix 41	AE5	B	247	255	Right-handed alpha
Helix 42	AE6	B	259	272	Right-handed alpha
Helix 43	AE7	B	274	288	Right-handed alpha
Helix 44	AE8	B	291	305	Right-handed alpha
Helix 45	AE9	B	309	330	Right-handed alpha
Helix 46	AF1	B	333	350	Right-handed alpha
Helix 47	AF2	C	21	26	Right-handed alpha
Helix 48	AF3	C	30	34	Right-handed 310
Helix 49	AF4	C	37	50	Right-handed alpha
Helix 50	AF5	C	65	78	Right-handed alpha
Helix 51	AF6	C	97	102	Right-handed alpha
Helix 52	AF7	C	103	111	Right-handed alpha
Helix 53	AF8	C	126	130	Right-handed 310
Helix 54	AF9	C	131	138	Right-handed alpha
Helix 55	AG1	C	138	145	Right-handed alpha
Helix 56	AG2	C	157	161	Right-handed 310
Helix 57	AG3	C	162	169	Right-handed alpha
Helix 58	AG4	C	178	194	Right-handed alpha
Helix 59	AG5	C	198	210	Right-handed alpha
Helix 60	AG6	C	212	227	Right-handed alpha
Helix 61	AG7	C	231	239	Right-handed alpha
Helix 62	AG8	C	243	257	Right-handed alpha
Helix 63	AG9	C	258	274	Right-handed alpha
Helix 64	AH1	C	276	291	Right-handed alpha
Helix 65	AH2	C	294	312	Right-handed alpha
Helix 66	AH3	C	317	340	Right-handed alpha
Helix 67	AH4	D	39	44	Right-handed alpha
Helix 68	AH5	D	48	52	Right-handed 310
Helix 69	AH6	D	55	68	Right-handed alpha
Helix 70	AH7	D	83	96	Right-handed alpha
Helix 71	AH8	D	100	104	Right-handed alpha
Helix 72	AH9	D	115	128	Right-handed alpha
Helix 73	AI1	D	156	162	Right-handed alpha
Helix 74	AI2	D	163	170	Right-handed alpha
Helix 75	AI3	D	182	186	Right-handed 310
Helix 76	AI4	D	187	194	Right-handed alpha
Helix 77	AI5	D	203	218	Right-handed alpha
Helix 78	AI6	D	223	235	Right-handed alpha
Helix 79	AI7	D	237	253	Right-handed alpha
Helix 80	AI8	D	258	266	Right-handed alpha
Helix 81	AI9	D	270	284	Right-handed alpha
Helix 82	AJ1	D	285	299	Right-handed alpha
Helix 83	AJ2	D	302	315	Right-handed alpha
Helix 84	AJ3	D	320	340	Right-handed alpha
Helix 85	AJ4	D	343	362	Right-handed alpha
Helix 86	AJ5	E	3	8	Right-handed alpha
Helix 87	AJ6	E	12	16	Right-handed 310
Helix 88	AJ7	E	19	30	Right-handed alpha
Helix 89	AJ8	E	47	60	Right-handed alpha
Helix 90	AJ9	E	61	66	Right-handed 310
Helix 91	AK1	E	96	102	Right-handed 310
Helix 92	AK2	E	103	117	Right-handed alpha
Helix 93	AK3	E	137	140	Right-handed 310
Helix 94	AK4	E	141	149	Right-handed alpha
Helix 95	AK5	E	150	155	Right-handed alpha
Helix 96	AK6	E	167	171	Right-handed 310
Helix 97	AK7	E	172	178	Right-handed alpha
Helix 98	AK8	E	188	203	Right-handed alpha
Helix 99	AK9	E	208	219	Right-handed alpha
Helix 100	AL1	E	222	237	Right-handed alpha
Helix 101	AL2	E	249	265	Right-handed alpha
Helix 102	AL3	E	267	284	Right-handed alpha
Helix 103	AL4	E	287	300	Right-handed alpha
Helix 104	AL5	E	307	325	Right-handed alpha
Helix 105	AL6	E	327	349	Right-handed alpha
Helix 106	AL7	F	9	19	Right-handed alpha
Helix 107	AL8	F	72	80	Right-handed alpha
Helix 108	AL9	F	141	153	Right-handed alpha
Helix 109	AM1	F	209	216	Right-handed alpha
Helix 110	AM2	F	217	222	Right-handed 310
Helix 111	AM3	G	9	19	Right-handed alpha
Helix 112	AM4	G	72	81	Right-handed alpha
Helix 113	AM5	G	141	151	Right-handed alpha
Helix 114	AM6	G	209	216	Right-handed alpha
Helix 115	AM7	G	217	219	Right-handed 310
Helix 116	AM8	H	9	14	Right-handed alpha
Helix 117	AM9	H	55	57	Right-handed 310
Helix 118	AN1	H	72	76	Right-handed alpha
Helix 119	AN2	H	141	151	Right-handed alpha
Helix 120	AN3	H	152	154	Right-handed 310
Helix 121	AN4	H	190	194	Right-handed 310
Helix 122	AN5	H	209	216	Right-handed alpha
Helix 123	AN6	H	217	219	Right-handed 310

There are 14 sheets in PDB entry 8UMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	181	first strand
Strand 2	A	187	191	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	398	first strand
Strand 2	A	430	435	parallel
Strand 3	A	486	490	parallel
Strand 4	A	369	373	parallel
Strand 5	A	506	509	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	803	807	first strand
Strand 2	A	813	817	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	136	140	parallel
Strand 3	B	165	171	parallel
Strand 4	B	72	75	parallel
Strand 5	B	186	189	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	90	first strand
Strand 2	C	120	124	parallel
Strand 3	C	149	155	parallel
Strand 4	C	56	59	parallel
Strand 5	C	170	173	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	108	first strand
Strand 2	D	145	149	parallel
Strand 3	D	174	179	parallel
Strand 4	D	74	77	parallel
Strand 5	D	195	198	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	75	first strand
Strand 2	E	81	88	anti-parallel
Strand 3	E	92	95	anti-parallel
Strand 4	E	130	135	parallel
Strand 5	E	159	165	parallel
Strand 6	E	37	41	parallel
Strand 7	E	179	183	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	62	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	88	92	anti-parallel
Strand 4	F	98	103	anti-parallel
Strand 5	F	110	117	anti-parallel
Strand 6	G	176	182	anti-parallel
Strand 7	G	167	172	anti-parallel
Strand 8	G	157	162	anti-parallel
Strand 9	G	203	208	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	25	30	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	46	53	anti-parallel
Strand 5	F	245	251	anti-parallel
Strand 6	F	233	240	anti-parallel
Strand 7	F	224	230	anti-parallel
Strand 8	F	135	140	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	170	first strand
Strand 2	F	157	161	anti-parallel
Strand 3	F	204	208	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	62	first strand
Strand 2	G	2	6	anti-parallel
Strand 3	G	88	92	anti-parallel
Strand 4	G	98	104	anti-parallel
Strand 5	G	110	117	anti-parallel
Strand 6	H	178	182	anti-parallel
Strand 7	H	167	171	anti-parallel
Strand 8	H	157	162	anti-parallel
Strand 9	H	203	208	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	71	first strand
Strand 2	G	25	30	anti-parallel
Strand 3	G	34	40	anti-parallel
Strand 4	G	46	53	anti-parallel
Strand 5	G	245	251	anti-parallel
Strand 6	G	235	240	anti-parallel
Strand 7	G	224	229	anti-parallel
Strand 8	G	135	140	anti-parallel
Strand 9	G	196	197	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	62	first strand
Strand 2	H	2	5	anti-parallel
Strand 3	H	88	92	anti-parallel
Strand 4	H	98	104	anti-parallel
Strand 5	H	111	117	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	67	71	first strand
Strand 2	H	25	30	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	46	53	anti-parallel
Strand 5	H	245	251	anti-parallel
Strand 6	H	235	239	anti-parallel
Strand 7	H	224	229	anti-parallel
Strand 8	H	135	140	anti-parallel
Strand 9	H	196	197	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UMY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UMY