Analysis of interatomic Contacts of Structural Units in PDB entry:
8UNF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UNF entry

There are 10 chains in PDB entry 8UNF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	G 1	A 20
I	T 7	C 30
H	MET 6001	PHE 6228
G	MET 5001	PHE 5228
F	MET 7001	PHE 7228
E	MET 1	LYS 319
D	MET 1	LYS 319
C	MET 1	LYS 319
B	MET 1	LYS 319
A	MET 1	TRP 187

There are103 helices in PDB entry 8UNF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	6004	6018	Right-handed alpha
Helix 2	AA2	H	6056	6067	Right-handed alpha
Helix 3	AA3	H	6119	6133	Right-handed alpha
Helix 4	AA4	G	5004	5015	Right-handed alpha
Helix 5	AA5	G	5056	5067	Right-handed alpha
Helix 6	AA6	G	5096	5100	Right-handed 310
Helix 7	AA7	G	5119	5134	Right-handed alpha
Helix 8	AA8	G	5185	5187	Right-handed 310
Helix 9	AA9	F	7004	7018	Right-handed alpha
Helix 10	AB1	F	7056	7066	Right-handed alpha
Helix 11	AB2	F	7096	7100	Right-handed 310
Helix 12	AB3	F	7119	7134	Right-handed alpha
Helix 13	AB4	E	10	15	Right-handed alpha
Helix 14	AB5	E	26	38	Right-handed alpha
Helix 15	AB6	E	55	68	Right-handed alpha
Helix 16	AB7	E	77	79	Right-handed 310
Helix 17	AB8	E	80	86	Right-handed alpha
Helix 18	AB9	E	86	94	Right-handed alpha
Helix 19	AC1	E	115	128	Right-handed alpha
Helix 20	AC2	E	145	152	Right-handed alpha
Helix 21	AC3	E	161	183	Right-handed alpha
Helix 22	AC4	E	189	200	Right-handed alpha
Helix 23	AC5	E	203	215	Right-handed alpha
Helix 24	AC6	E	227	231	Right-handed 310
Helix 25	AC7	E	235	244	Right-handed alpha
Helix 26	AC8	E	246	258	Right-handed alpha
Helix 27	AC9	E	260	274	Right-handed alpha
Helix 28	AD1	E	277	294	Right-handed alpha
Helix 29	AD2	E	300	315	Right-handed alpha
Helix 30	AD3	D	10	15	Right-handed alpha
Helix 31	AD4	D	26	40	Right-handed alpha
Helix 32	AD5	D	55	68	Right-handed alpha
Helix 33	AD6	D	77	79	Right-handed 310
Helix 34	AD7	D	80	85	Right-handed alpha
Helix 35	AD8	D	86	93	Right-handed alpha
Helix 36	AD9	D	111	113	Right-handed 310
Helix 37	AE1	D	114	128	Right-handed alpha
Helix 38	AE2	D	140	144	Right-handed 310
Helix 39	AE3	D	145	152	Right-handed alpha
Helix 40	AE4	D	161	184	Right-handed alpha
Helix 41	AE5	D	189	201	Right-handed alpha
Helix 42	AE6	D	203	214	Right-handed alpha
Helix 43	AE7	D	222	230	Right-handed alpha
Helix 44	AE8	D	235	245	Right-handed alpha
Helix 45	AE9	D	246	259	Right-handed alpha
Helix 46	AF1	D	260	273	Right-handed alpha
Helix 47	AF2	D	277	294	Right-handed alpha
Helix 48	AF3	D	295	298	Right-handed 310
Helix 49	AF4	D	300	315	Right-handed alpha
Helix 50	AF5	C	10	15	Right-handed alpha
Helix 51	AF6	C	19	23	Right-handed 310
Helix 52	AF7	C	26	40	Right-handed alpha
Helix 53	AF8	C	55	67	Right-handed alpha
Helix 54	AF9	C	77	79	Right-handed 310
Helix 55	AG1	C	80	85	Right-handed alpha
Helix 56	AG2	C	86	94	Right-handed alpha
Helix 57	AG3	C	111	113	Right-handed 310
Helix 58	AG4	C	114	128	Right-handed alpha
Helix 59	AG5	C	140	144	Right-handed 310
Helix 60	AG6	C	145	151	Right-handed alpha
Helix 61	AG7	C	161	183	Right-handed alpha
Helix 62	AG8	C	189	201	Right-handed alpha
Helix 63	AG9	C	203	214	Right-handed alpha
Helix 64	AH1	C	221	229	Right-handed alpha
Helix 65	AH2	C	236	245	Right-handed alpha
Helix 66	AH3	C	246	254	Right-handed alpha
Helix 67	AH4	C	255	259	Right-handed 310
Helix 68	AH5	C	260	274	Right-handed alpha
Helix 69	AH6	C	277	294	Right-handed alpha
Helix 70	AH7	C	300	315	Right-handed alpha
Helix 71	AH8	B	10	15	Right-handed alpha
Helix 72	AH9	B	19	23	Right-handed 310
Helix 73	AI1	B	26	40	Right-handed alpha
Helix 74	AI2	B	55	67	Right-handed alpha
Helix 75	AI3	B	77	79	Right-handed 310
Helix 76	AI4	B	80	86	Right-handed alpha
Helix 77	AI5	B	86	94	Right-handed alpha
Helix 78	AI6	B	114	128	Right-handed alpha
Helix 79	AI7	B	140	144	Right-handed 310
Helix 80	AI8	B	145	152	Right-handed alpha
Helix 81	AI9	B	161	183	Right-handed alpha
Helix 82	AJ1	B	189	201	Right-handed alpha
Helix 83	AJ2	B	203	215	Right-handed alpha
Helix 84	AJ3	B	221	230	Right-handed alpha
Helix 85	AJ4	B	235	245	Right-handed alpha
Helix 86	AJ5	B	246	254	Right-handed alpha
Helix 87	AJ6	B	255	258	Right-handed 310
Helix 88	AJ7	B	260	274	Right-handed alpha
Helix 89	AJ8	B	277	294	Right-handed alpha
Helix 90	AJ9	B	300	315	Right-handed alpha
Helix 91	AK1	A	11	19	Right-handed alpha
Helix 92	AK2	A	21	30	Right-handed alpha
Helix 93	AK3	A	40	49	Right-handed alpha
Helix 94	AK4	A	61	71	Right-handed alpha
Helix 95	AK5	A	72	74	Right-handed 310
Helix 96	AK6	A	75	86	Right-handed alpha
Helix 97	AK7	A	90	102	Right-handed alpha
Helix 98	AK8	A	120	132	Right-handed alpha
Helix 99	AK9	A	134	149	Right-handed alpha
Helix 100	AL1	A	150	159	Right-handed alpha
Helix 101	AL2	A	160	162	Right-handed 310
Helix 102	AL3	A	165	171	Right-handed alpha
Helix 103	AL4	A	175	183	Right-handed alpha

There are 17 sheets in PDB entry 8UNF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6021	6023	first strand
Strand 2	H	6052	6054	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6026	6032	first strand
Strand 2	H	6038	6048	anti-parallel
Strand 3	H	6214	6219	anti-parallel
Strand 4	H	6204	6210	anti-parallel
Strand 5	H	6194	6201	anti-parallel
Strand 6	H	6114	6118	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6072	6075	first strand
Strand 2	H	6081	6085	anti-parallel
Strand 3	H	6088	6092	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6179	6183	first strand
Strand 2	H	6137	6143	anti-parallel
Strand 3	H	6146	6152	anti-parallel
Strand 4	H	6165	6171	anti-parallel
Strand 5	G	5088	5092	anti-parallel
Strand 6	G	5081	5084	anti-parallel
Strand 7	G	5072	5075	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5021	5023	first strand
Strand 2	G	5052	5054	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5026	5032	first strand
Strand 2	G	5038	5048	anti-parallel
Strand 3	G	5214	5219	anti-parallel
Strand 4	G	5204	5210	anti-parallel
Strand 5	G	5194	5201	anti-parallel
Strand 6	G	5114	5118	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5225	5226	first strand
Strand 2	G	5178	5183	anti-parallel
Strand 3	G	5137	5143	anti-parallel
Strand 4	G	5146	5152	anti-parallel
Strand 5	G	5165	5171	anti-parallel
Strand 6	F	7088	7092	anti-parallel
Strand 7	F	7081	7084	anti-parallel
Strand 8	F	7072	7075	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7021	7023	first strand
Strand 2	F	7052	7054	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7026	7029	first strand
Strand 2	F	7038	7048	anti-parallel
Strand 3	F	7214	7219	anti-parallel
Strand 4	F	7205	7210	anti-parallel
Strand 5	F	7194	7200	anti-parallel
Strand 6	F	7114	7118	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7165	7171	first strand
Strand 2	F	7146	7152	anti-parallel
Strand 3	F	7137	7142	anti-parallel
Strand 4	F	7180	7183	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	75	first strand
Strand 2	E	102	107	parallel
Strand 3	E	132	138	parallel
Strand 4	E	45	48	parallel
Strand 5	E	153	156	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	187	first strand
Strand 2	E	219	220	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	75	first strand
Strand 2	D	102	107	parallel
Strand 3	D	132	138	parallel
Strand 4	D	45	48	parallel
Strand 5	D	153	156	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	187	first strand
Strand 2	D	219	220	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	75	first strand
Strand 2	C	102	107	parallel
Strand 3	C	132	138	parallel
Strand 4	C	45	48	parallel
Strand 5	C	153	156	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	187	first strand
Strand 2	C	219	220	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	75	first strand
Strand 2	B	102	107	parallel
Strand 3	B	132	138	parallel
Strand 4	B	45	48	parallel
Strand 5	B	153	156	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UNF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UNF