Analysis of interatomic Contacts of Structural Units in PDB entry:
8UNK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UNK entry

There are 4 chains in PDB entry 8UNK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 356	TYR 533
C	PRO 5	LYS 148
K	MET 1	ILE 324
P	GLU 13	ILE 80

There are 31 helices in PDB entry 8UNK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	369	391	Right-handed alpha
Helix 2	AA2	B	392	395	Right-handed 310
Helix 3	AA3	B	421	425	Right-handed alpha
Helix 4	AA4	B	429	445	Right-handed alpha
Helix 5	AA5	B	476	496	Right-handed alpha
Helix 6	AA6	B	498	514	Right-handed alpha
Helix 7	AA7	B	516	529	Right-handed alpha
Helix 8	AA8	C	19	24	Right-handed alpha
Helix 9	AA9	C	37	50	Right-handed alpha
Helix 10	AB1	C	57	68	Right-handed alpha
Helix 11	AB2	C	72	80	Right-handed alpha
Helix 12	AB3	C	94	104	Right-handed alpha
Helix 13	AB4	C	109	113	Right-handed 310
Helix 14	AB5	C	115	127	Right-handed alpha
Helix 15	AB6	C	133	144	Right-handed alpha
Helix 16	AB7	K	43	63	Right-handed alpha
Helix 17	AB8	K	64	68	Right-handed 310
Helix 18	AB9	K	79	98	Right-handed alpha
Helix 19	AC1	K	106	118	Right-handed alpha
Helix 20	AC2	K	153	165	Right-handed alpha
Helix 21	AC3	K	171	180	Right-handed alpha
Helix 22	AC4	K	198	212	Right-handed alpha
Helix 23	AC5	K	215	243	Right-handed alpha
Helix 24	AC6	K	251	255	Right-handed 310
Helix 25	AC7	K	256	270	Right-handed alpha
Helix 26	AC8	K	278	283	Right-handed alpha
Helix 27	AC9	K	285	299	Right-handed alpha
Helix 28	AD1	K	304	308	Right-handed 310
Helix 29	AD2	K	315	319	Right-handed 310
Helix 30	AD3	P	16	32	Right-handed alpha
Helix 31	AD4	P	61	79	Right-handed alpha

There are 7 sheets in PDB entry 8UNK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	361	first strand
Strand 2	B	410	413	anti-parallel
Strand 3	B	401	405	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	420	first strand
Strand 2	B	457	459	anti-parallel
Strand 3	B	463	465	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	448	first strand
Strand 2	B	472	473	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	84	90	anti-parallel
Strand 3	C	7	14	anti-parallel
Strand 4	C	106	107	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	26	31	first strand
Strand 2	K	12	19	anti-parallel
Strand 3	K	2	7	anti-parallel
Strand 4	K	70	76	parallel
Strand 5	K	101	105	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	142	148	first strand
Strand 2	K	133	139	anti-parallel
Strand 3	K	124	128	anti-parallel
Strand 4	K	246	250	parallel
Strand 5	K	273	275	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	192	193	first strand
Strand 2	K	196	197	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UNK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UNK