Analysis of interatomic Contacts of Structural Units in PDB entry:
8UNQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UNQ entry

There are 4 chains in PDB entry 8UNQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 10	LEU 394
B	GLU 3	ASN 340
G	SER 8	ARG 62
R	ASP 29	CYS 341

There are 29 helices in PDB entry 8UNQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	40	Right-handed alpha
Helix 2	AA2	A	52	62	Right-handed alpha
Helix 3	AA3	A	233	239	Right-handed 310
Helix 4	AA4	A	264	278	Right-handed alpha
Helix 5	AA5	A	293	302	Right-handed alpha
Helix 6	AA6	A	307	312	Right-handed alpha
Helix 7	AA7	A	313	318	Right-handed 310
Helix 8	AA8	A	331	352	Right-handed alpha
Helix 9	AA9	A	370	391	Right-handed alpha
Helix 10	AB1	B	4	26	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	G	9	24	Right-handed alpha
Helix 13	AB4	G	29	44	Right-handed alpha
Helix 14	AB5	R	30	61	Right-handed alpha
Helix 15	AB6	R	67	97	Right-handed alpha
Helix 16	AB7	R	102	137	Right-handed alpha
Helix 17	AB8	R	140	145	Right-handed alpha
Helix 18	AB9	R	146	163	Right-handed alpha
Helix 19	AC1	R	166	171	Right-handed alpha
Helix 20	AC2	R	172	175	Right-handed 310
Helix 21	AC3	R	178	187	Right-handed alpha
Helix 22	AC4	R	196	208	Right-handed alpha
Helix 23	AC5	R	209	238	Right-handed alpha
Helix 24	AC6	R	269	287	Right-handed alpha
Helix 25	AC7	R	288	299	Right-handed alpha
Helix 26	AC8	R	304	317	Right-handed alpha
Helix 27	AC9	R	318	320	Right-handed 310
Helix 28	AD1	R	321	327	Right-handed alpha
Helix 29	AD2	R	329	339	Right-handed alpha

There are 8 sheets in PDB entry 8UNQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	41	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	363	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	168	anti-parallel
Strand 4	B	178	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	262	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	306	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UNQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UNQ