Analysis of interatomic Contacts of Structural Units in PDB entry:
8UNZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UNZ entry

There are 4 chains in PDB entry 8UNZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 11	LEU 394
B	GLU 3	ASN 340
G	ALA 7	ARG 62
R	GLU 30	LEU 339

There are 28 helices in PDB entry 8UNZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	40	Right-handed alpha
Helix 2	AA2	A	52	57	Right-handed alpha
Helix 3	AA3	A	234	239	Right-handed 310
Helix 4	AA4	A	251	254	Right-handed 310
Helix 5	AA5	A	266	278	Right-handed alpha
Helix 6	AA6	A	279	283	Right-handed 310
Helix 7	AA7	A	296	302	Right-handed alpha
Helix 8	AA8	A	307	311	Right-handed 310
Helix 9	AA9	A	331	354	Right-handed alpha
Helix 10	AB1	A	371	391	Right-handed alpha
Helix 11	AB2	B	4	25	Right-handed alpha
Helix 12	AB3	B	29	34	Right-handed alpha
Helix 13	AB4	G	8	22	Right-handed alpha
Helix 14	AB5	G	29	44	Right-handed alpha
Helix 15	AB6	R	31	61	Right-handed alpha
Helix 16	AB7	R	66	97	Right-handed alpha
Helix 17	AB8	R	102	137	Right-handed alpha
Helix 18	AB9	R	140	145	Right-handed alpha
Helix 19	AC1	R	146	164	Right-handed alpha
Helix 20	AC2	R	166	171	Right-handed alpha
Helix 21	AC3	R	178	187	Right-handed alpha
Helix 22	AC4	R	196	208	Right-handed alpha
Helix 23	AC5	R	209	237	Right-handed alpha
Helix 24	AC6	R	269	287	Right-handed alpha
Helix 25	AC7	R	288	299	Right-handed alpha
Helix 26	AC8	R	304	317	Right-handed alpha
Helix 27	AC9	R	317	326	Right-handed alpha
Helix 28	AD1	R	329	339	Right-handed alpha

There are 9 sheets in PDB entry 8UNZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	213	first strand
Strand 2	A	218	223	anti-parallel
Strand 3	A	41	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	360	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	81	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	115	first strand
Strand 2	B	120	125	anti-parallel
Strand 3	B	135	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	165	169	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	241	245	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	252	first strand
Strand 2	B	262	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	307	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UNZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UNZ