Analysis of interatomic Contacts of Structural Units in PDB entry:
8UO2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UO2 entry

There are 4 chains in PDB entry 8UO2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	LEU 394
B	LEU 4	ASN 340
G	ILE 9	ARG 62
R	VAL 31	LEU 339

There are 30 helices in PDB entry 8UO2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	39	Right-handed alpha
Helix 2	AA2	A	52	62	Right-handed alpha
Helix 3	AA3	A	90	109	Right-handed alpha
Helix 4	AA4	A	161	165	Right-handed alpha
Helix 5	AA5	A	195	200	Right-handed alpha
Helix 6	AA6	A	233	237	Right-handed 310
Helix 7	AA7	A	264	278	Right-handed alpha
Helix 8	AA8	A	293	303	Right-handed alpha
Helix 9	AA9	A	307	312	Right-handed alpha
Helix 10	AB1	A	313	318	Right-handed 310
Helix 11	AB2	A	331	350	Right-handed alpha
Helix 12	AB3	A	373	391	Right-handed alpha
Helix 13	AB4	B	5	25	Right-handed alpha
Helix 14	AB5	B	29	34	Right-handed alpha
Helix 15	AB6	B	35	37	Right-handed 310
Helix 16	AB7	G	10	24	Right-handed alpha
Helix 17	AB8	G	29	45	Right-handed alpha
Helix 18	AB9	G	55	59	Right-handed 310
Helix 19	AC1	R	32	61	Right-handed alpha
Helix 20	AC2	R	68	97	Right-handed alpha
Helix 21	AC3	R	102	137	Right-handed alpha
Helix 22	AC4	R	137	145	Right-handed alpha
Helix 23	AC5	R	146	171	Right-handed alpha
Helix 24	AC6	R	178	187	Right-handed alpha
Helix 25	AC7	R	196	208	Right-handed alpha
Helix 26	AC8	R	208	237	Right-handed alpha
Helix 27	AC9	R	269	299	Right-handed alpha
Helix 28	AD1	R	304	317	Right-handed alpha
Helix 29	AD2	R	317	326	Right-handed alpha
Helix 30	AD3	R	329	339	Right-handed alpha

There are 8 sheets in PDB entry 8UO2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	213	first strand
Strand 2	A	218	222	anti-parallel
Strand 3	A	41	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	360	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	329	anti-parallel
Strand 4	B	318	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	81	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	103	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	178	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	243	first strand
Strand 2	B	250	254	anti-parallel
Strand 3	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	277	first strand
Strand 2	B	284	287	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	307	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UO2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UO2