Analysis of interatomic Contacts of Structural Units in PDB entry:
8UO4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8UO4 entry

There are 4 chains in PDB entry 8UO4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	LEU 394
B	GLU 3	ASN 340
G	GLN 11	ARG 62
R	GLY 35	TYR 326

There are 24 helices in PDB entry 8UO4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	40	Right-handed alpha
Helix 2	AA2	A	54	65	Right-handed alpha
Helix 3	AA3	A	92	113	Right-handed alpha
Helix 4	AA4	A	145	157	Right-handed alpha
Helix 5	AA5	A	160	165	Right-handed alpha
Helix 6	AA6	A	266	278	Right-handed alpha
Helix 7	AA7	A	293	303	Right-handed alpha
Helix 8	AA8	A	307	312	Right-handed alpha
Helix 9	AA9	A	331	352	Right-handed alpha
Helix 10	AB1	A	369	382	Right-handed alpha
Helix 11	AB2	A	383	389	Right-handed alpha
Helix 12	AB3	B	4	25	Right-handed alpha
Helix 13	AB4	B	29	34	Right-handed alpha
Helix 14	AB5	G	12	24	Right-handed alpha
Helix 15	AB6	G	32	44	Right-handed alpha
Helix 16	AB7	R	36	55	Right-handed alpha
Helix 17	AB8	R	70	91	Right-handed alpha
Helix 18	AB9	R	102	137	Right-handed alpha
Helix 19	AC1	R	147	171	Right-handed alpha
Helix 20	AC2	R	179	184	Right-handed alpha
Helix 21	AC3	R	198	208	Right-handed alpha
Helix 22	AC4	R	209	234	Right-handed alpha
Helix 23	AC5	R	270	296	Right-handed alpha
Helix 24	AC6	R	304	326	Right-handed alpha

There are 8 sheets in PDB entry 8UO4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	212	first strand
Strand 2	A	219	221	anti-parallel
Strand 3	A	41	45	parallel
Strand 4	A	243	248	parallel
Strand 5	A	286	291	parallel
Strand 6	A	359	360	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	70	74	anti-parallel
Strand 3	B	78	81	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	111	113	anti-parallel
Strand 3	B	123	125	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	241	245	anti-parallel
Strand 3	B	250	252	anti-parallel
Strand 4	B	262	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	293	298	anti-parallel
Strand 4	B	306	309	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	320	first strand
Strand 2	B	327	329	anti-parallel
Strand 3	B	337	339	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8UO4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8UO4