Analysis of interatomic Contacts of Structural Units in PDB entry:
8UO5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8UO5 entry

There are 4 chains in PDB entry 8UO5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9ALA 589
B
 ASP 9ASP 444
C
 LYS 4LEU 309
D
 PHE 3GLN 45
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 8UO5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 20Right-handed alpha
Helix 2
AA2
A
24 33Right-handed alpha
Helix 3
AA3
A
35 42Right-handed alpha
Helix 4
AA4
A
62 74Right-handed alpha
Helix 5
AA5
A
75 80Right-handed alpha
Helix 6
AA6
A
81 86Right-handed alpha
Helix 7
AA7
A
89 98Right-handed alpha
Helix 8
AA8
A
101 117Right-handed alpha
Helix 9
AA9
A
120 127Right-handed alpha
Helix 10
AB1
A
127 138Right-handed alpha
Helix 11
AB2
A
140 148Right-handed alpha
Helix 12
AB3
A
150 155Right-handed alpha
Helix 13
AB4
A
156 158Right-handed 310
Helix 14
AB5
A
159 175Right-handed alpha
Helix 15
AB6
A
178 196Right-handed alpha
Helix 16
AB7
A
197 213Right-handed alpha
Helix 17
AB8
A
217 222Right-handed alpha
Helix 18
AB9
A
223 235Right-handed alpha
Helix 19
AC1
A
236 244Right-handed alpha
Helix 20
AC2
A
244 253Right-handed alpha
Helix 21
AC3
A
256 266Right-handed alpha
Helix 22
AC4
A
266 292Right-handed alpha
Helix 23
AC5
A
295 305Right-handed alpha
Helix 24
AC6
A
305 313Right-handed alpha
Helix 25
AC7
A
314 326Right-handed alpha
Helix 26
AC8
A
326 335Right-handed alpha
Helix 27
AC9
A
338 350Right-handed alpha
Helix 28
AD1
A
352 357Right-handed alpha
Helix 29
AD2
A
359 364Right-handed alpha
Helix 30
AD3
A
364 373Right-handed alpha
Helix 31
AD4
A
377 386Right-handed alpha
Helix 32
AD5
A
388 393Right-handed alpha
Helix 33
AD6
A
397 412Right-handed alpha
Helix 34
AD7
A
416 443Right-handed alpha
Helix 35
AD8
A
443 452Right-handed alpha
Helix 36
AD9
A
455 474Right-handed alpha
Helix 37
AE1
A
474 482Right-handed alpha
Helix 38
AE2
A
482 487Right-handed alpha
Helix 39
AE3
A
488 492Right-handed 310
Helix 40
AE4
A
494 520Right-handed alpha
Helix 41
AE5
A
522 528Right-handed alpha
Helix 42
AE6
A
529 531Right-handed 310
Helix 43
AE7
A
533 548Right-handed alpha
Helix 44
AE8
A
549 551Right-handed 310
Helix 45
AE9
A
552 559Right-handed alpha
Helix 46
AF1
A
559 568Right-handed alpha
Helix 47
AF2
A
572 586Right-handed alpha
Helix 48
AF3
B
129 136Right-handed alpha
Helix 49
AF4
B
149 157Right-handed alpha
Helix 50
AF5
B
221 225Right-handed 310
Helix 51
AF6
B
281 286Right-handed alpha
Helix 52
AF7
B
334 339Right-handed alpha
Helix 53
AF8
B
340 344Right-handed 310
Helix 54
AF9
C
5 19Right-handed alpha
Helix 55
AG1
C
24 34Right-handed alpha
Helix 56
AG2
C
61 73Right-handed alpha
Helix 57
AG3
C
92 107Right-handed alpha
Helix 58
AG4
C
121 127Right-handed alpha
Helix 59
AG5
C
128 137Right-handed alpha
Helix 60
AG6
C
139 149Right-handed alpha
Helix 61
AG7
C
176 183Right-handed alpha
Helix 62
AG8
C
193 201Right-handed alpha
Helix 63
AG9
C
221 231Right-handed alpha
Helix 64
AH1
D
7 22Right-handed alpha
Helix 65
AH2
D
29 39Right-handed alpha
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There are 10 sheets in PDB entry 8UO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 36first strand
Strand 2
B
42 45anti-parallel
Strand 3
B
51 56anti-parallel
Strand 4
B
72 78anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 101first strand
Strand 2
B
109 114anti-parallel
Strand 3
B
119 126anti-parallel
Strand 4
B
164 171anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 185first strand
Strand 2
B
191 196anti-parallel
Strand 3
B
199 204anti-parallel
Strand 4
B
212 216anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 234first strand
Strand 2
B
241 244anti-parallel
Strand 3
B
251 255anti-parallel
Strand 4
B
267 269anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
288 293first strand
Strand 2
B
299 304anti-parallel
Strand 3
B
307 312anti-parallel
Strand 4
B
321 324anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 350first strand
Strand 2
B
356 361anti-parallel
Strand 3
B
365 370anti-parallel
Strand 4
B
376 380anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 424first strand
Strand 2
B
431 434anti-parallel
Strand 3
B
439 442anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 116first strand
Strand 2
C
80 84parallel
Strand 3
C
52 55parallel
Strand 4
C
273 278anti-parallel
Strand 5
C
284 289anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
164 165first strand
Strand 2
C
237 239parallel
Strand 3
C
256 259parallel
Strand 4
C
248 251anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 203first strand
Strand 2
C
219 220parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il